gcnt7 (LOC108272018,LOC108272017)


Basic Information

Item Value
gene id gcnt7
gene name LOC108272018,LOC108272017
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10335393 ~ 10339327 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940181.2
gagagagagagagagaggcatgaCTAGTTGCTAGGCAAGCTCAGCCTCTAAATCATTATGCCTCTGGTGAGCTCTCTCTCGTTGTATCACATGGGGAATGTAGCTGAGCAGCCAAGCAGCCAGTCAAACAGAGAAGAGAGGATAGCACACTGATTACAAAGCAGCAGAAACAAGAGCTTCAATAACACCACTATctgcatgcagtgtgtgtgtcggcAGCTCTTACAGCACACACCAGCTAACTAAATGGCACTACAGCAGGCATGACTCTCCTCTGCCTCAGGCAGCATGTATTTAGCTGAGGTCACCGTGGAGCAGACTTTTCTGGACGTCAGAGTTATTTAATGGTTAACCTTATTTAATGAGAGGACCAGACTCTGCTGCAGCTAAAAGACTAGTCTGCTTGATGCTGGATTATGCTCCAGCTTGAGAGTGCCAAGTGGAGTTTTCTTCTATGCCTTGGAATCAGCATCCTGATCTGCTCAGTCATTTATCTTAAGGGTAAACCTTCTTATGCTCCAAGGCCACTACACCGCACCTTGAGCTGCCGTCCATTCCCTGAAAGCTGTAAAGCTTTACCACCCACTTCCTCTTACACAAGATGGGAAAGAACAGAATGTCAGGAGCTGAGCTTTAACAATCCACTCAACTGCTCCCGTATACAATCTGAGCTTCACTTTATTATGGAGACCCTGAGCAAAGAAGAGGAGGACTACCCTCTGGCCTTCATCATCACTATCCACAAAGACCTGGAGATGTTTGTGCGTCTGCTCAGAGCCATCTATGCACCACACAATATCTACTGCATTCACATAGATGCCAAAGCTCCAGAAGACTACAGAGTAAGTGTTGAGAGATTGGCAGAGTGTTTTCCCAATGTTTTTCTAGCCTCAGTTAGTGAGACAGTGACCTATGCTGGTTTTTCTCGCCTGAAGGCTGACATTAATTGCATGGAGGACCTGGTGAGATCTCCAGTCAAATGGCAAAGGGTGATAAACCTGTGTGGCCAGGATTTCCCTGTTCAGAGCAACCTGGAGCTGGTCCGATATATGCAAGATGCAGAATGGAGAGATAATAATATGACTCCAGGCGTAAAACAGCCAAAGGACATGCAACACAGGACTCAAATACAGCATATAGAAGTTAAAGGTGAGCAGGTGGCCTCCATGGGTCAAGGTTACCAAAAGACTCCCCCTCCACACAACCTGACGATCTACTTTGGTACAGCCTACTATAGTCTGCAAAGAGCATTCGTGGAATATGTGCTCACCAGCTCAGTGGCCAAAGACCTGTTGGAGTGGTCCAAGGATACCTACAGCCCCGATGAGCATTACTGGGTAACCCTTAACCATGTGGAAGATGCCCCTGGCAGCAATGTAAACGCTGGCTGGGAGGGTAACATTCGAGCCATTAAATGGAAAGACCAAGAAGGAACAGCACATCAAGGCTGTAATGGACATTATGTCAGGGATATCTGCATCTACAATGTTGAGGATTTACCCTGGATAATTGAGAAGAACAGCATGTTTGCTAACAAGTTTGAGAGCAGTAGTtttcctgaagctcttgactgcCTGGAACAGTGGCACAGGCACAAAGTCCTTCAGCAGGCAACAGTACCCATTCAGATATCATGGCAACTTGCAACAGAGGTCAATATTAGTAGTGCCACAGTAGCaggctgaattaaaaaaaagccaaagagATAAGGTCACAGTTGAGATAGTTAATTCTTAAACTAAATTATCCACACAATTCAACATGAAATGATTAATCCATGAAACATGGATACTGAGCAGagacttttactttttttttt
>XM_026940250.2
gagagagagagagagaggcatgaCTAGTTGCTAGGCAAGCTCAGCCTCTAAATCATTATGCCTCTGGTGAGCTCTCTCTCGTTGTATCACATGGGGAATGTAGCTGAGCAGCCAAGCAGCCAGTCAAACAGAGAAGAGAGGATAGCACACTGATTACAAAGCAGCAGAAACAAGAGCTTCAATAACACCACTATctgcatgcagtgtgtgtgtcggcAGCTCTTACAGCACACACCAGCTAACTAAATGGCACTACAGCAGGCATGACTCTCCTCTGCCTCAGGCAGCATGTATTTAGCTGAGGTCACCGTGGAGCAGACTTTTCTGGACGTCAGAGTTATTTAATGGTTAACCTTATTTAATGAGAGGACCAGACTCTGCTGCAGCTAAAAGACTAGTCTGCTTGATGCTGGATTATGCTCCAGCTTGAGAGTGCCAAGTGGAGTTTTCTTCTATGCCTTGGAATCAGCATCCTGATCTGCTCAGTCATTTATCTTAAGGGTAAACCTTCTTATGCTCCAAGGCCACTACACCGCACCTTGAGCTGCCGTCCATTCCCTGAAAGCTGTAAAGCTTTACCACCCACTTCCTCTTACACAAGATGGGAAAGAACAGAATGTCAGGAGCTGAGCTTTAACAATCCACTCAACTGCTCCCGTATACAATCTGAGCTTCACTTTATTATGGAGACCCTGAGCAAAGAAGAGGAGGACTACCCTCTGGCCTTCATCATCACTATCCACAAAGACCTGGAGATGTTTGTGCGTCTGCTCAGAGCCATCTATGCACCACACAATATCTACTGCATTCACATAGATGCCAAAGCTCCAGAAGACTACAGAGCTGACATTAATTGCATGGAGGACCTGGTGAGATCTCCAGTCAAATGGCAAAGGGTGATAAACCTGTGTGGCCAGGATTTCCCTGTTCAGAGCAACCTGGAGCTGGTCCGATATATGCAAGATGCAGAATGGAGAGATAATAATATGACTCCAGGCGTAAAACAGCCAAAGGACATGCAACACAGGACTCAAATACAGCATATAGAAGTTAAAGGTGAGCAGGTGGCCTCCATGGGTCAAGGTTACCAAAAGACTCCCCCTCCACACAACCTGACGATCTACTTTGGTACAGCCTACTATAGTCTGCAAAGAGCATTCGTGGAATATGTGCTCACCAGCTCAGTGGCCAAAGACCTGTTGGAGTGGTCCAAGGATACCTACAGCCCCGATGAGCATTACTGGGTAACCCTTAACCATGTGGAAGATGCCCCTGGCAGCAATGTAAACGCTGGCTGGGAGGGTAACATTCGAGCCATTAAATGGAAAGACCAAGAAGGAACAGCACATCAAGGCTGTAATGGACATTATGTCAGGGATATCTGCATCTACAATGTTGAGGATTTACCCTGGATAATTGAGAAGAACAGCATGTTTGCTAACAAGTTTGAGAGCAGTAGTtttcctgaagctcttgactgcCTGGAACAGTGGCACAGGCACAAAGTCCTTCAGCAGGCAACAGTACCCATTCAGATATCATGGCAACTTGCAACAGAGGTCAATATTAGTAGTGCCACAGTAGCaggctgaattaaaaaaaagccaaagagATAAGGTCACAGTTGAGATAGTTAATTCTTAAACTAAATTATCCACACAATTCAACATGAAATGATTAATCCATGAAACATGGATACTGAGCAGagacttttactttttttttt

Function

NR:

description
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940181.2 True 1819 mRNA 0.45 4 10335393 10339327
XM_026940250.2 False 1726 mRNA 0.45 5 10335393 10339327

Neighbor

gene id symbol gene type direction distance location
eya2 eya2,LOC107666141,LOC106565282 coding downstream 76174 10241254 ~ 10259219 (-)
LOC113532087 LOC108271496 coding downstream 116012 10213908 ~ 10219381 (-)
slc12a5a slc12a5,si:ch211-59d13.2,LOC107744354 coding downstream 137002 10044762 ~ 10198391 (-)
ctsa ctsa,LOC107587598,LOC107696438,LOC107744356,LOC107666023,LOC107560512 coding downstream 301943 10025424 ~ 10033450 (-)
pcif1 pcif1,LOC107666074,LOC107696439 coding downstream 329300 9994349 ~ 10006093 (-)
LOC113532783 cdh22,LOC107553911,LOC107666158,LOC107587604,LOC107681302 coding upstream 213584 10552911 ~ 10743445 (-)
znfx1 znfx1 coding upstream 535597 10874924 ~ 10885023 (-)
ddx27 ddx27,LOC107553908,LOC107587605,LOC107681294 coding upstream 549085 10888412 ~ 10903945 (-)
snrpb snrpb,LOC108272150 coding upstream 566868 10906195 ~ 10910484 (-)
cbfa2t2 cbfa2t2,LOC107681292,LOC107740270,LOC107666150 coding upstream 646981 10986308 ~ 11011812 (-)
G24623 NA non-coding downstream 164218 10170970 ~ 10171175 (-)
G24620 NA non-coding downstream 166924 10168211 ~ 10168469 (-)
G24617 NA non-coding downstream 174152 10161032 ~ 10161241 (-)
G24611 NA non-coding downstream 183228 10151817 ~ 10152165 (-)
G24572 NA non-coding downstream 396350 9938256 ~ 9939043 (-)
LOC113534445 NA non-coding upstream 627369 10966696 ~ 10984007 (-)
G25184 NA non-coding upstream 682196 11021523 ~ 11021725 (-)
G25185 NA non-coding upstream 683112 11022439 ~ 11022641 (-)
LOC117599085 NA non-coding upstream 918437 11257764 ~ 11262304 (-)
G25320 NA non-coding upstream 987499 11326826 ~ 11329556 (-)
G24516 NA other downstream 467115 9863367 ~ 9868278 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other downstream 609342 9715516 ~ 9726051 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other downstream 893548 9435506 ~ 9441845 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other downstream 1851212 8479374 ~ 8484181 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other downstream 1983699 8343624 ~ 8351694 (-)
G24760 NA other upstream 149966 10489293 ~ 10490295 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other upstream 576715 10916042 ~ 10934164 (-)
kif5ab kif5a other upstream 1103144 11442471 ~ 11485469 (-)
LOC113526127 LOC108272031,LOC108431803 other upstream 1347418 11686745 ~ 11764135 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 3154185 13493512 ~ 13502170 (-)

Expression


Co-expression Network