snrpc (snrpc,LOC107587645,LOC107696417,LOC107666039)


Basic Information

Item Value
gene id snrpc
gene name snrpc,LOC107587645,LOC107696417,LOC107666039
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9570763 ~ 9576988 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941321.2
aagaggaggcggaagcagcagaagaagaagcagctcCTCCTGGCCGCTTGGTGGCGCCGACGCGCTCTTTATCGAGGCGAGAGCGACTCATTGAACATCCGGTTAGGGCACCGCATTTTGTTTGCCCGTGAAGATGCCGAAATTTTACTGTGACTACTGCGACACATACTTAACACACGACTCGCCATCAGTAAGGAAAACTCACTGCAGTGGACGCAAACACAAAGAGAATGTAAAGGACTATTATCAGAAATGGATGGAGGAGCAGGCCCAGAGCCTGATCGACAAAACAAcTGCGGCATTCCAGCAGGGGAAAATTCCACCCACGCCGTTCCCGGGCGCTGGCCCTCCGGGCGGATCGCTGCTCCCTCATCCCAATATCAGTGGACCGCCTAGGCCAGGCATGTTACCAGCTCCTCCAATGGGTGGCCCTCCAATGATGCCCATGATGGGTCCTCCTCCACATGGCATGATGCCTGGTGGTCCAGGCCCGGGTATGCGGCCCCCTATGGGTGGGCATATGCAAATGATGCCAGGTCCACACATGATGCGACCTCCTGCTCGGCCAATGATGCTCCCTGTAAGACCTGGCATGGCACGACCGGATCGATAGAAAGAACTGTTGTGCCATAATTGCCTTCCTCTTCTAAACAAAGACTCCACCAACTGCATATATTGGCTTTACCATGGTTTCAGTTGTTTCAGCAACAGAAGGTCATCGATTTTCATTTAACAGGACCCATATTCTCTCTTTTTAACGTGGATGTCCATCTTTTTCCCCTGGCCAATTATTCTTATTTGTTAATTAAGATACAATATATGTGATATTTCCAAGCTGGATTGGTTTAAGTTTTAGtgtcagaacattttttttttttttttttttt

Function

symbol description
snrpc Predicted to enable pre-mRNA 5'-splice site binding activity. Acts upstream of or within regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U1 snRNP. Human ortholog(s) of this gene implicated in connective tissue disease; mixed connective tissue disease; and systemic lupus erythematosus. Orthologous to human SNRPC (small nuclear ribonucleoprotein polypeptide C).

NR:

description
PREDICTED: U1 small nuclear ribonucleoprotein C

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0000387 spliceosomal snRNP assembly biological_process
GO:0000395 mRNA 5'-splice site recognition biological_process
GO:0005685 U1 snRNP cellular_component
GO:0000243 commitment complex cellular_component
GO:0071004 U2-type prespliceosome cellular_component
GO:0003729 mRNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0030619 U1 snRNA binding molecular_function

KEGG:

id description
K11095 SNRPC; U1 small nuclear ribonucleoprotein C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941321.2 True 887 mRNA 0.49 6 9570763 9576988

Neighbor

gene id symbol gene type direction distance location
ilrun c11h6orf106,cunh6orf106,zgc:101577,LOC107724532,LOC107595408,LOC107666165 coding downstream 33859 9519378 ~ 9536904 (-)
LOC113530144 LOC108271967,LOC108433664,LOC107595455,LOC107724522,LOC107744410,LOC107587644,LOC107666045,LOC107696418 coding downstream 60999 9500833 ~ 9509764 (-)
rps10 rps10,LOC107595410,LOC102793608 coding downstream 99407 9468540 ~ 9471356 (-)
hyal2a LOC108271981 coding downstream 138166 9429116 ~ 9432597 (-)
hyal1 LOC108271980 coding downstream 144207 9410354 ~ 9426556 (-)
sys1 sys1,LOC107587582,LOC107744372,LOC106565403 coding upstream 6933 9583921 ~ 9587318 (-)
tnni1b tnni1,LOC106582713,LOC106566026,LOC103040607 coding upstream 166043 9743031 ~ 9749764 (-)
csrp1b csrp1,LOC108441585,LOC104918388,LOC101487148 coding upstream 175633 9752621 ~ 9756596 (-)
LOC113530316 LOC108271764 coding upstream 365067 9942055 ~ 9954145 (-)
ube2c ube2c,LOC107744406 coding upstream 401885 9978873 ~ 9982851 (-)
G24185 NA non-coding downstream 160460 9409908 ~ 9410303 (-)
LOC113527743 NA non-coding downstream 235436 9334668 ~ 9335327 (-)
G24087 NA non-coding downstream 239935 9330480 ~ 9330828 (-)
G24073 NA non-coding downstream 284108 9279922 ~ 9286655 (-)
G23991 NA non-coding downstream 499994 9070406 ~ 9070769 (-)
LOC113532565 NA non-coding upstream 17508 9594496 ~ 9596485 (-)
LOC113532571 NA non-coding upstream 35392 9612380 ~ 9615583 (-)
LOC113532556 NA non-coding upstream 38599 9615587 ~ 9620959 (-)
G24260 NA non-coding upstream 58866 9635854 ~ 9636519 (-)
G24268 NA non-coding upstream 98534 9675522 ~ 9675739 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other downstream 128918 9435506 ~ 9441845 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other downstream 1086582 8479374 ~ 8484181 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other downstream 1219069 8343624 ~ 8351694 (-)
mitfa mitf,LOC108424034 other downstream 1305534 8260485 ~ 8265229 (-)
G22591 NA other downstream 3090752 6479402 ~ 6480011 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other upstream 138528 9715516 ~ 9726051 (-)
G24516 NA other upstream 286379 9863367 ~ 9868278 (-)
G24760 NA other upstream 912305 10489293 ~ 10490295 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other upstream 1339054 10916042 ~ 10934164 (-)
kif5ab kif5a other upstream 1865483 11442471 ~ 11485469 (-)

Expression


Co-expression Network