tubb1 (tubb1,LOC107685846,LOC107554186,LOC107666034,LOC107729746)


Basic Information

Item Value
gene id tubb1
gene name tubb1,LOC107685846,LOC107554186,LOC107666034,LOC107729746
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3839963 ~ 3845724 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945622.2
GATAATGACATCATCATTGGTATAATACTCACACTGGGCTCTCACAGTTATCTTCTGCTGAGGAGTGTGAGTCTCATCACCATGCGTGAGATTGTTCATCTTCAGATCGGACAGTGTGGTAATCAGATCAGTTCAAAGTTCTGGGAAGTTATCAGTGACGAACATGGTATCAGTGCATTGGGAACCTATGAGGGGGACATGGACGTTCAGCTGGAGAGGGCCAGTGTCTACTTTAATGAAGCAAATGGTGGGAAGTATGTCCCCCGGGCAGTGCTGGTGGATTTGGAACCAGGAACAATAGACAGTGTGAGGGGAAGTCACATTGGAGGACTCTTCAGACCTGACAACTTCATACATGGAAATTCTGGAGCTGGAAATAACTGGGCAAAAGGTCACTACACAGAGGGGGCAGAGTTGGTCGAGCAAGTAGTAGACCGTGTCCGTAACGAAGCTGAAAGTTGCGACTGCCTGCAGGGCTTCCAGTTTGTTCACTCTTTGGGTGGTGGTACCGGCTCAGGCATGGGCACCCTCCTCATCAACAAAATTCGTGAAGAGTTCCCAGACCGAATCATGAATAGCTTTAGTGTCATGCCCTCTCCTAAAGTCTCTGACACGGTAGTGGAGCCATATAATGCCACACTGTCCGTTCACCAACTGATTGAGAATACAGATGAGACATTCTGCATTGACAACGAAGCTCTTTATGATATCTGTTTCCGTACACTCAAGCTCACCACGCCAACATATGGAGATCTCAATCATCTTGTGTCTATGACTATGAGTGGGGTCACAACCTCTCTGCGCTTCCCTGGTCAGCTGAATGCTGACCTTCGCAAGCTGGCTGTCAATATGGTGCCCTTTCCCCGCCTTCACTTCTTTATGCCTGGCTTTGCTCCGCTCATACCACGAGGAAGTCATCAATACCAGGCCCTCTCTGTTCCTGAACTCACCCAGCAAATGTTTGATGCCCGGAACATGATGACAGCATGTGACCCCCGGCATGGCCGCTACCTTACTGTTGCAGGAGTTTTTCGTGGTCGTATGTCCACTAAAGAGGTGGATGAACAAATGCTTGCGGTTCAGCAGAAGAACAGCAACTACTTTGTGGAATGGATCCCCCACAACGTTAAAGTGGCTGTTTGTGACATCCCACCACGCGGCCTTAAAATGGCATCTACCTTCATTGGAAACAACACAGCCATCCAAGAGATTTTCCGGCGAGTTGGGGAGCAGTTTGCCATGATGTTCCGTCGCAAGGCTTTTCTGCACTGGTACACAGGAGAGGGCATGGATGAGATGGAGTTCACAGAGGCTGAGAGCAACCTGAATGATCTAGTATCTGAGTACCAGCAATATCAGGATGCCACAGCTGAGTTGGAGTGGGAGCCAGAGGAAGAAATTACAGAGGTAGAGGAAAATCCGGCAACAGTAATAAACACCAGCGTCGACATAAAAACTGAAACCATGAGTGATGCTTAGTCTAGTGAACAATTCTAGTGAAGAGGGTTGTGTTACCAAATGTGCTATATCTTGAATACTATTTAATATTGATACTATTACTACAATTTATTGATATAAAAACAATGGTGTGACATTATTCATGttcttgttttcattaaaaatattaatttctaCTTAATAATAACATGATTCTTTGTAAAGTTTGTGTTTAGCATATTTTGAGTCACGTTTGCAGTGTgtaatacagtatgtttcaAAACATGTACAACCAACATGCACCTTTCAAAACTGTTTTGAAATAATGTTCCAAAATTGAGTAGATATAGCATATAAAGacaataaatgttacatatattGTTCATTTAACAGAAATGTTCCATCAATGCATGCATGAGATTGTGAAAGAAAGATGTTTAGcacaataattatttttacaatggTGCAGAGATACTTTGAAATATCTAAAAGTGTTAAg

Function

symbol description
tubb1 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Human ortholog(s) of this gene implicated in autosomal dominant macrothrombocytopenia TUBB1-related. Orthologous to human TUBB1 (tubulin beta 1 class VI).

NR:

description
PREDICTED: tubulin beta chain

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945622.2 True 1936 mRNA 0.44 4 3839963 3845724

Neighbor

gene id symbol gene type direction distance location
LOC113545812 LOC107667744,LOC107582924 coding downstream 16680 3817517 ~ 3823283 (-)
vapb vapb,LOC101078863 coding downstream 34354 3788470 ~ 3805609 (-)
ctsz ctsz,LOC107729770,LOC107596856,LOC107708086,LOC107666025 coding downstream 128206 3704874 ~ 3711757 (-)
LOC113545819 LOC108271666 coding downstream 301942 3530784 ~ 3538021 (-)
unc50 unc50,LOC107672653,LOC107686789,LOC107746628 coding downstream 404752 3427322 ~ 3435211 (-)
stx16 stx16,LOC107708146,LOC107685804,LOC107554194 coding upstream 92276 3938000 ~ 3958819 (-)
si:ch211-181l5.2 LOC108273231 coding upstream 158898 4004622 ~ 4008577 (-)
si:busm1-52i16.2 LOC108272376 coding upstream 178066 4023790 ~ 4025978 (-)
cldn10a cldn10a,LOC108272592,LOC108436398,LOC107551926,LOC107581434,LOC107659956,LOC107706622 coding upstream 188347 4034071 ~ 4039284 (-)
prelid3b prelid3b,LOC107749404,LOC107556737,LOC103464385 coding upstream 513396 4359120 ~ 4365171 (-)
G21306 NA non-coding downstream 54409 3785140 ~ 3785554 (-)
G21303 NA non-coding downstream 124920 3713299 ~ 3715043 (-)
G21153 NA non-coding downstream 183291 3656395 ~ 3656672 (-)
LOC117599952 LOC108271653,LOC108271638,LOC108271644,LOC108271652 non-coding downstream 288012 3549631 ~ 3551951 (-)
G21031 gorasp2,LOC107709057 non-coding downstream 493828 3344474 ~ 3346135 (-)
G21358 NA non-coding upstream 86412 3932136 ~ 3932568 (-)
G21377 NA non-coding upstream 148155 3993879 ~ 3999636 (-)
G21382 NA non-coding upstream 163407 4009131 ~ 4009340 (-)
LOC113545971 NA non-coding upstream 198840 4044564 ~ 4062409 (-)
G21400 LOC108272755 non-coding upstream 231404 4077128 ~ 4077827 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other downstream 61975 3750018 ~ 3777988 (-)
npepl1 npepl1,LOC107666140,LOC107554193 other downstream 103077 3715807 ~ 3736886 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other downstream 468809 3348308 ~ 3371154 (-)
LOC113545802 NA other downstream 1206283 2604654 ~ 2633680 (-)
slc9a7 slc9a7,LOC107711095,LOC107673530,LOC107753405 other downstream 2017295 1756160 ~ 1822668 (-)
G21434 NA other upstream 410944 4256668 ~ 4257087 (-)
trnaf-gaa_14 NA other upstream 486375 4332099 ~ 4332171 (-)
obsl1a obsl1 other upstream 967551 4813275 ~ 4902011 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other upstream 1265738 5111462 ~ 5201212 (-)
LOC113533127 NA other upstream 1560243 5405967 ~ 5414086 (-)

Expression


Co-expression Network