cachd1 (cachd1,LOC107692379,LOC107556548)


Basic Information

Item Value
gene id cachd1
gene name cachd1,LOC107692379,LOC107556548
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21538999 ~ 21579079 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298204.1
CGTGGTGAACAGGAACAAGCAGGTGGTGGAGGCATCGTACACAGCCCACCTGACTTCCCCGCTCACAGACATTCAGGACTGCTGCTCGATCCACCCTCCATGATGGAGTTTGATGGAAATTTTAACACAAATGTGTCAAAAACCATCAGCTGCGATCGACTGTCCCCCAACGTCAACAGCCGAGCTTTCAACCCTGGACGAGACCTCAATTCGGtgttggCAGACAACCTGAAGTCGAACCCAGGCATCAAGTGGCAGTACTTCAGCTCAGAGGAGGGCATCTTCACTGTGTTCCCTGCTCACAAGTTTCACTGCAAAAGCACATATGAGCACAGGAGCAGGCCTGTGTATGTGTCAGCGGTGAGGCCACAGTCAAAGCATGTGGTGGTGCTCATCGACCACGGCGCCTCTGTCAGCGAGACACAGCTCCAGATCGCCCGCGACGCCGCTCTCGTCATTCTCAACTCCATTGACGAACATGACAAAATCTCGTTGTTGACAGTGGCTGATGCGGTTCGTTCTTGCTCCTTGGATCAATGCTATAAGAGCTTCTTGTCTCCTGCCACCAGTGAGACCAAGCGCAAGATGAGCACGTTCATTAACAGCATTAAGTCCTCAGACAGTGCTACCCAGCATGCCATGGGCTTCCAGAAGGCCTTTCAGCTTCTGAGGAACACCAGCAGCATGGGCAGACCCCACAGCAacactgATATGGTGATAATCTACCTGTCGTCGGGCGTCACCTCTCGAGACTCCTCAGAGCATGAGAAGAGAGCCACTCTAAACGTGGTTAAAGAGGAGAATCGGCACCTCAACAACTCCGTAATGATCCTCACCTATGCTCTTATCAacgAGGGAGTAACAGGTCTGAAGGAGTTGGCGTTTATGCGTGACCTGGCAGAGCAGAACTCCGCTAAATACAGCATTTCGGATCGTACCACTCTCCCTGTTGTGAAGGGAAGCATGATGGTGCTGAACCAGCTCAGTAACCTGGAGACCAGCGTGGGCCGTTTCTACATCAACCTGCCCAACCGTATGATCGATGTGGCCTCCTTCAGCCTGCCCTACGCTGATCAGATGGGCGATGGCTTCATTATGACAGTCAGCCGGCCGTGCTACTTTGGGAACCTGCTGCTTGGAGTTGTGGGAGTGGATGTCAACCTTGCTTATATCCTCGAGGACGTCACCTACTACCAGGACTCGCTGGCTTCGTACACCTTCCTCATAGATAACAAAGGTTTCACCCTCATGCACCCATCCCTGACTCGTCCGTACCTGATGACCGAAGCCCCGCTACACACAGACATCATCCACTATGAGAATATCCCCGGATTTGCCGCTGTTCGCCAGAACATCCTCAGTTTGCCTCTGGGTAGCCAGGTGATCTCTGTTCCCATCAACTCGTCTCTGTCCTGGCATGTGAATCGTCTGCGGGATCCGAGCCGAGACGCCTACAATGTCAGCTATGCTTGGAAACTGGTGCAGGACACGTCTTTCATCCTGTGCATAGTGTACGTTCAGCCTGAGATCCCCGTGAAGCAGTTGAAGAACCTGAACACTGCCCCCAGCAGTAAGCTCTTGTACCACCGGCTGGACCTGCTGGGCCAACCCAGCTCCTGCCTGCACTTCAAACAGCTTGCTACTGTGGAGAGCCCAACCGTGATGTTATCAGCCGGGAGTTTCTCCTCTCCTTACGAGCACCTGAGTCAGCCAGAGACCAAACGCATGGTGGAGCACTACACAGCCTACCTGAGTGATAACACACGCCTCATAGCCAACCCCGGCCTGAAGtcGTCTGTCAGGAATGATGTGATGGCGACGAGTCACGTGACAGACGAATGGCTGAGTCTCATGGAGCTGAGCAGCTTGAACTGCTACATTGTGCGCCGTTACATAGCAACGCCCAATGGGGTGCTGCGGATTTACCCCGGCTCGCTGATGGACAAAGCCTTTGACCCCACCAGGAGACAATGgtaTCTGCATGCTGTGGCCAATCCTGGTTTGATCACTTTCACCGGACCTTACCTGGATGTTGGTGGAGCCGGCTATGTAGTCACCATCAGCCACACCATCCACGCCTCTAGCTCTCAGATGGCCCCAGGCTATGCAGTAGCAGTAATGGGCATCGACTTTACCCTGCGCTACTTCTATAAAGTCCTGCTGGATCTACTGCCCATCTGCAACCAGGACAAGGGAAATAAAATCCGgtgttttatTATGGAGGACAGAGGCTACCTGGTGGCCCACCCCACATTGATCGACCCTAAAGGCCACGCTCCAGCAGAACAGCAGCATATCACGCATAAGgaaccCCTGGTGGCAAACGATATCCTCAACCACCCGAACTTTGTGAAGAAGAAGctgtgtaacagtttcagtGATCGCACAGTGCAGCGCTTCTACAAGTTCAACACTAGCATTGTGGGTGATCTGACGAACCTGGTTCACGGCAGTCACTGCTCAAAGTACAGACTCACTCGTATTCCAGGAACCAACGCGTTTGCAGGCATCGTGAATGAGACTTGCGATTCGCTGGCCTTCTGTGCGTGCAGCACTGTGGACCGCCTCTGCCTAAACTGCCACAGAATGGAGcagaatgagtgtgagtgtcCATGTGAGTGCCCTCTGGAGGTGAATGAGTGTACTGGCAATCTCACTAATGCAGAAAACAGgaatCCAAGCTGTGATGTACACCAAGAGCCCTTGTCAATGACAGTGATTGAGTCTAGTTTGCAGGACACTTTGCCTCAGTGCATCAACACTCGATGCAGCCAGCGCTTCACCAGCAGTGACTGCTTTGGTGTGTTGGACTGCGAGTGGTGTGTGGTAGACAGTGACGGAAAGACACAGCTGGACAAACCTTACTGTGCTCTACAGAAGGAGTGTTTTGGGGGAATTGTAGGTGCCAAGAGTCCTTATGTGGATGGCATGGGTCTTTTAGATGAAGAGGTGGCGTCTCTTAACATGATTAAGAGTGCACCCGTGGGTCCAGTAGCAGGAGGAATTATGGGCTGCATCATGGTGCTGGTTTTGGTCGTGTACGCCTACAGGCACCAGATCCACCGCCGCAGCCATCAGCACATGTCACCTCTGGCAGCGCAGGaaatgtcagtgcGGATGTCCAACTTGGACAACGAGCGTGATGAAAGGGATGATGACAGTCATGAAGACAGAGGAATAATCAGTAACACACGCTTCATCGCTGCTGTCAtcgagagacacacacacagtcctgagCGCAGGCGGCGGTACTGGGGCCGATCAGGAACAGAAAGCGACCATGgctACAGCACTATGAGTCCTCAAGAGGACAGTGAGAATCCACCATGCACCAGTGAGCCCCTCTCAGCAGGAGTGGATGTGGGAAACCATGACGAGGAGCTGGAACTGGACACACCACCCCAGACCGCTGCACTGCTCAGCCACAAGCTCTACCCGCatcggcacacacacacacgccacccgctgcacacgcacacgcaccaCCTGCAGGCGGCAGTCACCGTTCACAGTGTGGACGCCGAGTGCTAAACCCAAAACCCCACCCACAGAGCTCACCTTTAATGCCACTTCACTCCGAGGCCTGCCTTCATCCTCCACTTCCACTTTGAGCCTAAAGCCAGACGCTGTGCCCTTCTGAGAGAGCAAAGGGAGAAAAGGGACGGGGCCGAGGCCACCTGGGGAAATCCTCTGTGATGAGGAAAGTCTTTTTAACCTGAACTCTTGAACCTGGACTTAACTGCTTTTAATGGTGTGGAGGCACAGATTTGCACTTGTTTTAAGTGCcgcaaagcatctcaaaatttttttttttaaaggaaacatgAAGCCGAAaggattatttttttactatttatttaactgGAATTGAGGTGGGAACATATGAATGGAGGGAACTTGATGATTAGTTCGTCATTAGGAGGCCCTGTTCAGCCGGACTACAGAGCAATGAGCAGTGGGATGTGTGGCACTTTACGTCACGCACACGTTACTGTGAGAATGTACtgtagtgcaaaaaaaaaaaaaaatcagatacgGATGGGCATAAGTGGCTGCACTGAACGTTGGACAGAaagcgcaaaaaaaaaagaaaaaggaacgCACACCAGCCATCTGTGAGTGGAGGCAGAAATGTGTTGCTTCTCTGAATCTGTTCATTCGCTGCATGGTTTGTTCCAAGCCTGTTATTTACGAAAGAGGAAGAGATTCTCCCGAAAACTGTAATGTTCAAAGGATCTCCAAGATTTAAGTGTTTCACCTCCCAATCACAACTGTTTTAGGACATTTTTAAAGTGACCTCAAGATGCTGAGATGTACCACTGTGTGTATAAACCTTCAATATTATATCCCTATTCAGTCCTGACCAGCCATTTTATCTGGAGTGAGTGggttattttttacaaatagCTCAGTATTGGtcagtatttttcattttccctgATGGACAAGCAGAAATATCAGAATCCTGCACTTCTGTCAAGTTGCCCATCTAATCCAGATGTTGCCTTTGTGCTTATATGATTTTAGAGTGATTATGCCTATTGTTTCCAGATtgaaaaaatatacatgtatatacatttgACCTTTAACAAAGTAGCTTATAAATGAGTTCACTCCTCA

Function

symbol description
cachd1 Predicted to enable voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Orthologous to human CACHD1 (cache domain containing 1).

NR:

description
PREDICTED: VWFA and cache domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298204.1 True 4620 mRNA 0.51 25 21538999 21579079

Neighbor

gene id symbol gene type direction distance location
ak4 ak4,LOC107590615,LOC107659053,LOC107692375,LOC107591174 coding downstream 138071 21386910 ~ 21400928 (-)
dnajc6 dnajc6 coding downstream 160225 21342709 ~ 21378774 (-)
pde4ba pde4b,pde4ba,LOC108443455,LOC107692372,LOC107659050,LOC107591166,LOC105913193 coding downstream 276884 21112205 ~ 21262115 (-)
sgip1a sgip1 coding downstream 454236 21017926 ~ 21084763 (-)
pars2 pars2 coding downstream 539610 20996088 ~ 20999389 (-)
ror1 ror1,LOC107731648,LOC107556549,LOC107591177 coding upstream 55488 21634567 ~ 21756087 (-)
pgm1 pgm1,LOC107591179,LOC107704513,LOC107731639,LOC107739071,LOC107692428 coding upstream 185836 21764915 ~ 21777950 (-)
alg6 alg6,LOC107704515 coding upstream 217481 21796560 ~ 21815679 (-)
foxd3 foxd3,foxd1 coding upstream 243663 21822742 ~ 21825474 (-)
atg4c atg4c coding upstream 378456 21957535 ~ 21968209 (-)
G31481 NA non-coding downstream 6540 21532248 ~ 21532459 (-)
G31454 NA non-coding downstream 126826 21389477 ~ 21412173 (-)
G31298 NA non-coding downstream 153723 21384409 ~ 21385276 (-)
G31094 NA non-coding downstream 473261 21062894 ~ 21065738 (-)
G31070 NA non-coding downstream 578608 20960172 ~ 20960391 (-)
G31489 NA non-coding upstream 23465 21602544 ~ 21603863 (-)
G31491 NA non-coding upstream 28317 21607396 ~ 21609167 (-)
G31492 NA non-coding upstream 36242 21615321 ~ 21615675 (-)
G31681 NA non-coding upstream 525119 22104198 ~ 22104411 (-)
LOC117596032 NA non-coding upstream 551346 22130425 ~ 22132698 (-)
raver2 raver2 other downstream 7571 21449546 ~ 21531428 (-)
lepr lepr other downstream 221176 21281364 ~ 21317823 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 1109674 20359722 ~ 20429325 (-)
glmnb LOC108272089 other downstream 1524905 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 2721801 18817127 ~ 18817198 (-)
ccdc17 ccdc17 other upstream 993353 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 1003224 22582303 ~ 22593861 (-)
dmrt2b LOC108271504 other upstream 1643214 23222293 ~ 23225548 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 2036375 23615454 ~ 23632013 (-)
nbeal1 nbeal1 other upstream 4101011 25680090 ~ 25738817 (-)

Expression


Co-expression Network