LOC113528309


Basic Information

Item Value
gene id LOC113528309
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17543676 ~ 17547134 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300500.1
CATACCGTCAGTTTAAACCAGacatattttagcatttaaaatatattagcaTAAAGTATAATTAAGTATAATTAATAGAAACCTGAGTAATCTTATGCCTCTCTGATTTATCAAACACCAAATGAACCTGCAGAAGAACTGAGAGACAAACATGAGCCGCAAGCAAGAAGACTGCTACTTCTTCTTTAACTCCACATGCACCAAGGGGGATCGTTGCCCTTTCCGGCACTGTGAAGCTGCCAAGGGCAGCAAGACAGTGTGCAAATTCTGGCTGCAGAGCCGCTGCTTAAACAAGGCATGCAGATTTCGGCACATGGACATCAAGAAAAACCGCAGAGAAGTTCAGTGCTACTGGGAAAAGCAGCCAGGCGGTTGCCGAAAGCAggactgcacctttaaacaccAGAAGCCACGGACCATCAGACGGCTTCCTGTTCTCCAGGCCAAAAAATCTCTAGCTTCTGAGAAATGGAATGAAAATCTATCACCTTCTGATGTGACACCTGGCCAGAAGAAGAAACACTCAGGGAGCTTCTGCTCGGCTGATGCTGAGCGACTCCACTGCAAATGTGTTAAGAAAAACCAGCCAGACCAATGCAGAAAACAGGACTGCAACTTTAAGCCTGAGAAGTCCATCAGACAGCATATTGTTGTCCCAGCCAAAGACGATGAGATCGACGTCGTTATCAAAGCCCTTGAGGAGCTTAAGCTGGAGGACAGTGTGAACACCCATTTAAGAACAGCTGGGTCTCCTGCTTCTGAGAACTTCAATGAAAGTTTATCAGTAAAACAGACACCTTGTAATGTGAGACCTGGCAGGAAGAGAAAGACTGCATGGAGCGTCTGCTCGAATGATGAACCACCCTGCAAGCGTGCTAAGTTTCACCATCTATAACCCAGGAAAAGCAACATCCCCATTTTCCTGATTCCTGGACCATCTGCCTTAAGACgaatgaatacaaataaaactgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300500.1 True 972 mRNA 0.45 8 17543676 17547134

Neighbor

gene id symbol gene type direction distance location
dr1 dr1,LOC107555385 coding downstream 3771 17530559 ~ 17539905 (-)
sec16b sec16b coding downstream 81051 17438640 ~ 17462625 (-)
pbx1b pbx1,pbx1b,LOC108272157,LOC103479586 coding downstream 249671 17220584 ~ 17294005 (-)
LOC113536221 NA coding downstream 340427 17197989 ~ 17203249 (-)
med8 med8,LOC107690829,LOC107554872,LOC107708572 coding downstream 352217 17186645 ~ 17191459 (-)
scinla LOC108272108,LOC108437692,LOC105895209,LOC107675434,LOC107730699,LOC107564434,LOC105011765 coding upstream 3802 17550936 ~ 17567323 (-)
si:ch73-389b16.1 LOC108271542,LOC108437695 coding upstream 30257 17577391 ~ 17579519 (-)
btbd8 LOC108271611 coding upstream 36517 17583651 ~ 17614589 (-)
ephx4 ephx4,LOC107749983,LOC107555389,LOC107564433,LOC107678348,LOC107730701,LOC107675432 coding upstream 70982 17618116 ~ 17632144 (-)
brdt brdt,LOC107564438,LOC106584160 coding upstream 90016 17637150 ~ 17656210 (-)
G29196 NA non-coding downstream 32221 17487361 ~ 17511455 (-)
G29176 NA non-coding downstream 75519 17454285 ~ 17468157 (-)
G29174 NA non-coding downstream 109508 17433453 ~ 17434168 (-)
LOC113528975 NA non-coding downstream 113898 17423871 ~ 17429778 (-)
G29166 LOC108437688,LOC108272186,LOC103143039,LOC105011759,LOC105916686 non-coding downstream 147477 17394766 ~ 17396199 (-)
G29213 NA non-coding upstream 90193 17637327 ~ 17638017 (-)
G29223 NA non-coding upstream 153627 17700761 ~ 17714365 (-)
G29237 NA non-coding upstream 237341 17784475 ~ 17842820 (-)
G29439 NA non-coding upstream 905334 18452468 ~ 18452976 (-)
G29541 NA non-coding upstream 1067223 18614357 ~ 18614724 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other downstream 14361 17472330 ~ 17529315 (-)
G29158 NA other downstream 263503 17272955 ~ 17280173 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 1407961 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 2048467 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 2082675 15456635 ~ 15461001 (-)
G29263 NA other upstream 402023 17949157 ~ 17949718 (-)
G29279 NA other upstream 523853 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 601094 18148228 ~ 18195628 (-)
LOC113537624 NA other upstream 1246891 18794025 ~ 18816812 (-)
trnag-ucc NA other upstream 1269125 18816259 ~ 18816330 (-)

Expression


Co-expression Network