mafaa (mafa,mafaa,LOC107556987,LOC107591187)


Basic Information

Item Value
gene id mafaa
gene name mafa,mafaa,LOC107556987,LOC107591187
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22319135 ~ 22322050 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300900.1
ACGGTGTGAAGTCGGTGGGGCAGAGAGAGCGAAAGCGCTGGAGGAAAAGAGCAAGCAGTTTACAGGGATCTActgtttcatatatatatatataaacaacaacaataaagtATATCAAAGCTGTCCTGACGGAGGAGAAGGCACGCAGGTAGCTCGGGATATCCGCTGACAGACTTCAGTACTCTTTCTGTGGGCTGTCCCATCGCTGGAACTTactgtgatttcatttttttttttatgtatgtgtttTCTTGCTATGTTTCTTACTGACTCTCCTTAGCTAACCATTCCACTTAACTGGACTGATTAAGTGGCTGATGGTTCGAGTTGTCGGTGCTGCTGGTGACTGTTCCGCGCGAGTGAGGAAACTTCCAGCTGTTTGGCCCTGTGTGAGGACAGCTGTGCACAGCTGGAGACAAGGGATAACCGCACgtgcaaaaacagaagaaaagttGGGCAAACCTGTTTCTGGCATTTTCTACAATTTACGCTTCACCTGAAGGCGCGTTTAGAGGACTGAAGCAAAGACAGTTCTGAAGTGTCGAGTTCGTGCATTTGACCCGAGTGAAGTTGTCAACAAGAGGAGCGCAGAGGCGACCTGGCAGGTGTACAAGTGAGTTTACACGTGTGCTGCACGTCTAGCCCTGCTGCTATAAATAGAAGCCGTTCTACGCACTAAAATCAGAGAAACAGATGCTAAAGAGCTGTGCGTGAAACATCCCACCTGCACAGTCTTCACAGGACAGCACAGGACACTACAGGACAGCACAGGACACTACAGGACAGCACAGGACACTACAGGGCCTCTCACTCCCCCTCGCTTTGGCTCTGAGGCTGCACGTGTCCTCGCATGGACTGACATGGCTGCGGACCTCGCCATGAGCGCTGACCTGCCCAACAGCCCCCTGGCCATCGAGTATGTGAACGACTTCGACCTCATGAAGTTTGAGGTGAAAAAAGAGCCGCCTGAAGCCGAGCGCTACTGCCACCGCTTACCGCCGGGCTCTCTCTCCTCCACGCCCATCAGCACGCCCTGCTCCTCCGTGCCTTCCTCGCCAAGCTTTTGCGCACCGAGTCCCGGCGCACAGCCCGTCCAGAACCTCGGagttaacaacaacaacaacaacagcagcagcagcaatggtggaaacaacagcagcaacagtaCTCAAGGCGCCTCGGGCAAGCCCCAGCTGGAGGATTTCTACTGGATCCCTAACTACCAGCACCACATCAGCCCCGAGGCGTTAAACCTGACCCCTGAGGACGCGGTAGAGGCGCTCATTGGCAACgcgcaccaccaccaccatcaccatcaccaccagcCCTACGACACGTTCCGCGGGCAGCAGTACGTCGGCGAGGACCTGTCGACCTCCTCGAACGGCTACCACCACGCGGCGCACGCCCACCACgcgcaccaccaccaccacggCCACCACACGCACGCGCGCCTCGAAGACCGCTTCTCGGACGAGCAGCTCGTCAGCATGACGGTGCGCGAGTTGAACCGGCAGCTGCGCGGCTTCAGCAAGGAGGAGGTGATCCGCCTGAAGCAGAAGCGGCGCACCCTGAAGAACCGCGGCTACGCGCAGTCGTGCCGCTACAAGCGCGTGCAGCAGCGGCACATGCTCGAGACCGAGAAGTGCACACTGCAGAACCAGGTGGAGCAGCTCAAGCAGGACGTGGCGCGCCTGGCCAAAGAGAGGGACATGTACAAAGAAAAGTACGAGAAGCTCGCAGGCCGGAACTTCACCGGCGGCAGCAGCGGCACCCGGGACCCGTCCAGCGGCAACCACGGCAAAGCCTCATCGGCGGATTTCTTCATGTGAGAACtgtttcaggtctttttttttatcccacacaaactgattttttttaaacttttcgTTTTTATCtgagtgtgatttttttttttttaatttaggcTACAGTTCCTGCACAGCAAAATCCCCTGATGCTGAATTaacacttgcaaaaaaaaaggtactaaagtgtacttttccttgttacCCTCAAGGGTACACCTGTTCTAACTTTAGTGTGTGTCTTTGACCTAGAAAAGtgctttttaaagctttactccCAGCACTATTTACGGTCCAAATATGTACCTTACATGATGAAGGTACACCATGTCAACATTTCTAGGTGAAAGCTGCATATTAAATGCACAAGAGGGAAGGGTACCACCTCCCCGACAGGGAAAGGTGCACTTTAGTACgcttttttgagtgtatttgttcatttaacacTGAGGATTTTGCTGTgtgcttttcagaaaaaaaaagccaaggaCTCAGATCATTACATGACTACCACAAGCAACATATTTCCAGTAACGCACACACCATATTCTGAGTGTTTGTGCGCGTGCATTAGACTTTCAACTCTCGAAGTCTTAAAGGTAGTGTGTTATAGAGAAGCTATACACGGACCTCACCTCTGACCTAAACGTGGACTCATGCATCACCTCCAGACCCAAAACAGCGTGCTTTCTGACTCAGTGTATTATAGCATAGAGCGTTTTGTAATCTGAAAAGTCTTACATGCTCATACAGCCAGCGGTGTTTGTGTTCTCAGACTTGTGCACAGTCTTAACGGATCCGACTGCACCAAGCGCGAGACGGGTGGAACTGAAatgctatttatttacttatttatttatttttgtgatcgGACTAAAGAGGAAATTTGCAAGCCaacgaatgaatgaaaaaaggggggaaaagcAATAGATTGTTGGACTTATTTGACATGGTTGTACTCTCTGTAGTAACTCATGAACCTGAGAAGGAAGCATTGCAGCCTGCATCCACCCTCCAACCCTGCATGCGGGACATGTATGGTCACTAAATCTCCAAGCCCTTTGTATCTTTCCCACACAcctggatgaaaaaaaaaaaaaaaaaaaaa

Function

symbol description
mafa Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in pronephric mesoderm; pronephric proximal convoluted tubule; pronephric proximal straight tubule; and solid lens vesicle. Human ortholog(s) of this gene implicated in Ayme-Gripp syndrome; cataract; and cataract 21 multiple types. Orthologous to human MAF (MAF bZIP transcription factor).
mafaa Enables sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in myotome; nervous system; neural tube; and somite. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human MAFA (MAF bZIP transcription factor A).

NR:

description
PREDICTED: transcription factor MafA

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K07595 MAFA; transcription factor MAFA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300900.1 True 2916 mRNA 0.50 1 22319135 22322050

Neighbor

gene id symbol gene type direction distance location
LOC117599932 NA coding downstream 119501 22157708 ~ 22199634 (-)
LOC113538524 NA coding downstream 168897 22144203 ~ 22150238 (-)
usp1 usp1 coding downstream 272677 22035213 ~ 22046458 (-)
angptl3 angptl3 coding downstream 322414 21993695 ~ 21996721 (-)
atg4c atg4c coding downstream 350926 21957535 ~ 21968209 (-)
zc3h3 zc3h3 coding upstream 5405 22327455 ~ 22390555 (-)
LOC117599264 zc3h3 coding upstream 68203 22390253 ~ 22392793 (-)
adcyap1r1b adcyap1r1b,LOC108271541,LOC108441855,LOC107731652,LOC107717143,LOC107692394 coding upstream 162042 22484092 ~ 22514058 (-)
LOC113538473 NA coding upstream 225204 22547254 ~ 22552299 (-)
pik3r3b pik3r3,pik3r3b,LOC107717145,LOC107692397,LOC107594617,LOC107675943,LOC106584012 coding upstream 451076 22773126 ~ 22964855 (-)
G31755 NA non-coding downstream 3129 22315806 ~ 22316006 (-)
G31742 NA non-coding downstream 92475 22224385 ~ 22226660 (-)
LOC117599242 NA non-coding downstream 121467 22196594 ~ 22197668 (-)
LOC117599244 NA non-coding downstream 143395 22173351 ~ 22175740 (-)
LOC117596032 NA non-coding downstream 186437 22130425 ~ 22132698 (-)
G31916 NA non-coding upstream 216273 22538323 ~ 22560608 (-)
G31934 NA non-coding upstream 243242 22565292 ~ 22568836 (-)
G32157 NA non-coding upstream 389163 22711213 ~ 22785690 (-)
LOC113538262 NA non-coding upstream 668397 22990447 ~ 22995189 (-)
G32244 NA non-coding upstream 720481 23042531 ~ 23042762 (-)
raver2 raver2 other downstream 787707 21449546 ~ 21531428 (-)
lepr lepr other downstream 1001312 21281364 ~ 21317823 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 1889810 20359722 ~ 20429325 (-)
glmnb LOC108272089 other downstream 2305041 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 3501937 18817127 ~ 18817198 (-)
ccdc17 ccdc17 other upstream 250382 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 260253 22582303 ~ 22593861 (-)
dmrt2b LOC108271504 other upstream 900243 23222293 ~ 23225548 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 1293404 23615454 ~ 23632013 (-)
nbeal1 nbeal1 other upstream 3358040 25680090 ~ 25738817 (-)

Expression


Co-expression Network