rhebl1 (rhebl1,rheb,LOC103035598,LOC108435697,LOC105901881,LOC107710165)


Basic Information

Item Value
gene id rhebl1
gene name rhebl1,rheb,LOC103035598,LOC108435697,LOC105901881,LOC107710165
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6782273 ~ 6787592 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309682.1
AGTTTTCCCTGCCACACAGACCCCACAGCGCGCCGCGGTGTTTTCTGGGATGTTTTCTCATGCTGCCGTTCGCAGTGTGGCCCTCCAAGCAACTGTCGCGCTTCGACGCACTCAGCTTTACGACAGTTGCTAGTTCTCCCAAAACTTGGTTTCCGACAGTGACTTGAAAGTACCACGGCGGTGAATAAGCTTTTTTTTCGGTTGTCGACATTCGTTTCGAAAACAAGTTTTAAATTGGTACAGCAGGACtcagttatataaaaataatattctggGCGCGTGTATACGAGGTGTAGACCGTACCTAGAGTTTTTTAAGCCTTACCATTGTGTGGTTAGTGAAGTTGAAACTCGAGGCCCAGTGAACGGAGAAGCTcggaagaaaaaaagttttgttattGTCATGTGACGTGATACGCATGTGGCGATAAAGTGTGGCTAATCTCTCGGACTATTTACACCCAGTTATTTGATTTCAGCGTACAAGTCCTATTTACAAAGTATGCCTCAACCAAAATATAGAAAGATCGCTGTTTTGGGGTACCGGTCAGTTGGAAAGTCCTCTCTCACTATTCAGTTCGTGGAAGGGCAGTTTGTAGATGCATACGACCCTACAATCGAAAACACTTTTAATAAAATGGTGTCCATGAATGGACAAGACTTTAATCTTCAGCTGGTCGACActgctggacagGACGAGTACTCAATTTTCCCACAGTCTCACTCAATGGACATTCACGGTTATGTTCTGGTGTACTCTGTCACCTCAATGAAAAGCTTCGAAGTGGTTCAGGTTCTACATGACAAACTGCTTGACATGGTTGGAAAAatacagGTGCCAACTGTTCTGGTTGGAAATAAAAAAGACCTTCACATGGAAAGagttaTTAAACCAGAAGAAGGCAAGAAGTTAGCTGACTCTTGGGGAGCTGCCTTTATGGAATCATCTGCTAAGGAAAACCAGACAGCTGTAGAAGTTTTTAAGCGGATTATTTTGGAAATGGAGAAAGCGGACGGAAATGCCCCGTCTGAGGAGAAGAAATGTTGCGTGATGTAGATGCTGGTCTCTTTCAAAGACACACAGCAAGCTGCCTGGCCAAAGTTAAGAGTGACATCATCACCAGTCAGTACGATGCAGTGTGGTGGTGGGACTGCTGTTCTAAAACTCGACCCACTCCTCACAGCAGACAGGAAGATTTATATATGAATTTACATGAAATTGAGAAAAGCACGAAGAATGGTAAGCtgtcccagaaaaaaaaaaaaaaatcccgaAAGGAAAACAAATATGTCTAGCCTCAATTACACTACTGTTCATTTTCAATCAAAATACTTAAAGgtgcatttaaaatgaattgtaaACACCTCCATTGTTTTAACTGCACCTCTTAAATTTCTGACTTTGTTACAATGTTGGGCCCCATA

Function

symbol description
rhebl1 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in small GTPase mediated signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to several human genes including RHEBL1 (RHEB like 1).
rheb Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in small GTPase mediated signal transduction. Predicted to act upstream of or within positive regulation of TOR signaling and signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human RHEB (Ras homolog, mTORC1 binding).

NR:

description
PREDICTED: GTP-binding protein Rheb

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07208 RHEB; Ras homolog enriched in brain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309682.1 True 1424 mRNA 0.42 8 6782273 6787592

Neighbor

gene id symbol gene type direction distance location
LOC113531909 stk4,LOC108435692,LOC105901859,LOC103371188 coding downstream 11425 6744383 ~ 6770848 (-)
rbpjl rbpjl,LOC108271532 coding downstream 180164 6578612 ~ 6602109 (-)
oser1 oser1 coding downstream 227089 6549355 ~ 6555184 (-)
sdc4 NA coding downstream 244900 6527609 ~ 6537373 (-)
gdf5 gdf5 coding downstream 265850 6503521 ~ 6516423 (-)
cntn4 cntn4,LOC108272185,LOC108435696,LOC107713523,LOC107667016,LOC106582845 coding upstream 13333 6800925 ~ 6959160 (-)
LOC113529215 LOC108271629,LOC108435695 coding upstream 278726 7066318 ~ 7193141 (-)
chl1b chl1,LOC100380675 coding upstream 494415 7282007 ~ 7370519 (-)
ppp4r2b ppp4r2,LOC102785172,LOC107667031 coding upstream 990598 7778190 ~ 7786449 (-)
gxylt2 gxylt2,LOC107666964,LOC106565732 coding upstream 1000971 7788563 ~ 7822058 (-)
G22743 NA non-coding downstream 16581 6718275 ~ 6765692 (-)
G22699 NA non-coding downstream 98543 6683454 ~ 6683730 (-)
G22695 NA non-coding downstream 106586 6675480 ~ 6675687 (-)
G22650 NA non-coding downstream 159831 6621935 ~ 6622442 (-)
G22538 NA non-coding downstream 481226 6298122 ~ 6301047 (-)
G22896 NA non-coding upstream 11926 6799518 ~ 6800819 (-)
G23337 NA non-coding upstream 885108 7672700 ~ 7675334 (-)
G23330 NA non-coding upstream 917535 7705127 ~ 7710210 (-)
G23417 NA non-coding upstream 1095936 7883528 ~ 7883813 (-)
G23426 NA non-coding upstream 1118733 7906325 ~ 7907008 (-)
G22591 NA other downstream 302262 6479402 ~ 6480011 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other downstream 573607 6205284 ~ 6208666 (-)
LOC117596222 NA other downstream 705396 6074035 ~ 6076877 (-)
blcap blcap,bc10 other downstream 817090 5956639 ~ 5965183 (-)
romo1 romo1,LOC102788570 other downstream 1246213 5532037 ~ 5536060 (-)
mitfa mitf,LOC108424034 other upstream 1472893 8260485 ~ 8265229 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other upstream 1556032 8343624 ~ 8351694 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other upstream 1691782 8479374 ~ 8484181 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other upstream 2647914 9435506 ~ 9441845 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other upstream 2927924 9715516 ~ 9726051 (-)

Expression


Co-expression Network