zgc:152986 (LOC108271810)


Basic Information

Item Value
gene id zgc:152986
gene name LOC108271810
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 2717897 ~ 2721343 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312045.1
ATGATTACTCTCCCAAAACACGAGCAGGCTGAGCGCAGTCACGGAGAAGAAGCGGAGAAGACCAGCGCGCCCTCTGCTGTGcggaggaggaactacagcgcGCCCTCTGCTGTGCGGAGGAAGAACTACAGCGCGCCCTCTGCTGTGCGGAGGAAGAACTACAGCGCGCCCTCTGCTGTGCGGAGGAAGAACTACAGCGCGCCCTCCTGCTGTGcggaggaggaactacagcgcGCCCTCTTGCTGTGTGGAGGAAGAACTACAGCGCGCCCTCTGCTGTGCGGAGGAAGAACTACAGCGCGCCCTCTGCTGTGcggaggaggaactacagcgcGCCCTCCTGCTGTGcggaggaggaactacagcgcGCCCTCTGCTGTGcggaggaggaactacagcgcGCCCTCTTGCTGTGtggaggaggaactacagcgcGCCCTCTTGCTGTGtggaggaggaactacagcgcGCCCCTCTAACTACAGCGCGCCCTCTGCTGTGCGGAGGAAGAACTACAGCGCGCCCTCCTGCTGTGCGGAGGAAGAACTACAGCGCGCCCTCTGCTGTGcggaggaggaactacagcgcGCCCTCCTGCTGTGcggaggaggaactacagcgcGCCCTCCTGCTGTGcggaggaggaactacagcgcGCCCTCTTGCTGTGtggaggaggaactacagcgcGCCCTCTTGCTGTGtggaggaggaactacagcgcGCCCTCTGCTGTCCAGAAGAGGAACTACAGTGCAAAGGCAGTCGATGGCTCTGGCAGTCCGTGTGAGTGTCCTGCTGCTgctctgcgtgtgtgtatgtgtgtgtttggctgattattattcagtgttaGGAGTTCCTCGCTCTGCGTccgagagagagataaagaaagcgTTTCACCAGCTGGCCCGGAAGCTCCACCCGGACAGGAACCACAGCCCAGATGCTCAACACGTCTTCACACAGCTTGCACAAGCCTACGAGGTTCTGTCTAACCGAGAGAGACGGAGAATCTACGACCAAAACGGAGAGACGGAGAAGAAGCAGGATTTTTATGGCGACCAACACGGTTCCTATGGTGACAGCGATTTCCTGGCCTTCGGTCTACATGAGCTCCTGAATATGCTGCGGATGGAGGATGATTTCATGATGTGGGAAGATGCGGGTCTGGGTCACGGGTGGAGCTTTACAATGTGGGATGAAGAtcaggatgatgatggtgatcaTCTCAGCGAGATGTTCAGTATGCTGTAAGatcagagagaagaagagtAATTGTAAGATATTGCAATATTGagtgtattttaatttcatattaaataaagtatctGTTTTAAAACAGGTTATGATAATGATTCATTCGGAATCCATGCGGGTgccagcattttttaaaatttttttttaatatgctgttattaaaacgatcctgagctcaggttacggTCTGTTTCctggatttcctctgggtttccaGATAAATTGCCCcgggtgtgaatgagtgtgtgaatgtgtgtgtttcatgaaCTAACATGTCGTCCAGGGTGCACTTCAGCTAAACTTCAGCTGAGTCAGCAAAATCCAAACCTGCTTCTGGTCGGGCCTTTGCTCAGCTCCACACATAGGAatgactgtataaaaaaaaaaaagcattttacacacacacacacacacacacaca

Function

NR:

description
PREDICTED: dnaJ homolog subfamily B member 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312045.1 True 1678 mRNA 0.53 4 2717897 2721343

Neighbor

gene id symbol gene type direction distance location
LOC113545857 LOC108261604,LOC108271807 coding downstream 2230 2702380 ~ 2715667 (-)
LOC113545965 LOC108271807,LOC108261604 coding downstream 17545 2688030 ~ 2700352 (-)
LOC113545966 LOC108271807,LOC108261604 coding downstream 31003 2667822 ~ 2686894 (-)
lnp1 lnp1 coding downstream 325131 2387942 ~ 2392766 (-)
tmem45a tmem45a coding downstream 334112 2366588 ~ 2383785 (-)
ghrl LOC108272045,LOC100329224,LOC100304469 coding upstream 17102 2738445 ~ 2741771 (-)
slc4a8 LOC108271813,LOC108440675,LOC107711038,LOC107667363,LOC107673578 coding upstream 38510 2759853 ~ 2803605 (-)
trnaf-gaa_13 NA coding upstream 315941 3037284 ~ 3037356 (-)
tatdn2 tatdn2,LOC107667383,LOC107582679,LOC107748398,LOC107585107 coding upstream 322664 3044007 ~ 3052277 (-)
slc25a12 slc25a12,LOC108271646,LOC108430860,LOC107686753,LOC107582326 coding upstream 672633 3393976 ~ 3415402 (-)
G20644 NA non-coding downstream 55267 2662312 ~ 2662630 (-)
G20643 NA non-coding downstream 56192 2661434 ~ 2661705 (-)
G20567 NA non-coding downstream 167350 2550346 ~ 2550547 (-)
G20537 NA non-coding downstream 262463 2455230 ~ 2455434 (-)
G20436 NA non-coding downstream 606957 2086062 ~ 2110940 (-)
G20675 ccdc174,LOC107711012,LOC107673461,LOC107585200 non-coding upstream 24265 2745608 ~ 2747092 (-)
G20801 NA non-coding upstream 226835 2948178 ~ 2948401 (-)
G20920 NA non-coding upstream 341907 3063250 ~ 3064519 (-)
G20942 NA non-coding upstream 364261 3085604 ~ 3085949 (-)
G20945 NA non-coding upstream 371332 3092675 ~ 3093630 (-)
LOC113545802 NA other downstream 84217 2604654 ~ 2633680 (-)
slc9a7 slc9a7,LOC107711095,LOC107673530,LOC107753405 other downstream 895229 1756160 ~ 1822668 (-)
slc48a1b LOC108271834,LOC107585148,LOC108441111,LOC107733581,LOC107711080,LOC103044934,LOC107685336 other downstream 1680301 1028827 ~ 1037596 (-)
LOC113545844 LOC108272247 other downstream 2104509 594565 ~ 613388 (-)
LOC117595947 LOC108272222 other downstream 2150377 546880 ~ 567520 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other upstream 626965 3348308 ~ 3371154 (-)
npepl1 npepl1,LOC107666140,LOC107554193 other upstream 994464 3715807 ~ 3736886 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other upstream 1028675 3750018 ~ 3777988 (-)
G21434 NA other upstream 1535325 4256668 ~ 4257087 (-)
trnaf-gaa_14 NA other upstream 1610756 4332099 ~ 4332171 (-)

Expression


Co-expression Network