prpf38a (prpf38a,LOC107731643,LOC107684051)


Basic Information

Item Value
gene id prpf38a
gene name prpf38a,LOC107731643,LOC107684051
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 23063527 ~ 23071529 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312071.1
TGATGTAATGGATTCTACAgcctaagtagtgcactatgCGATCAATATTGCGGTATTTGCGACGCAGCCGTTCACTGGGTTTCCGCCGGACTGCATGAGCGCGTTTGAGTTGTGCAGTTGCTGTGTTGTTGTGTAGGCCATGGCGAACAGAACAGTTAAAGATGCGAACAGCATACACGGAACTAATCCGCAATATCTTGTGGAGAAAATTATTCGGACGCGAATCTACGAGTCTAAATACTGGAAAGAAGAATGTTTCGGGCTCACAGCCGAGCTGGTTGTGGACAAGGCGATGGAGCTGAAATACATCGGCGGTGTGTACGGAGGCAACATCAAACCCACGCCGTTCTTATGTCTCACTCTGAAGATGCTCCAGATTCAGCCGGAAAAAGACATCATTGTAGAATTCATCAAGAACGAAGATTTCAAATATGTCCGCCTGCTTGGAGCCATGTATATGCGCCTGACGGGCACCTCGGTGGACTGCTATAAGTATCTGGAACCGTTGTACAATGACTACAGAAAGATTAAAAGCCAGAACAGAAATGGAGAGTTTGAACTGATGCACGTGGACGAGTTCATTGATGAGCTGCTTCATGCCGAGCGCGTGTGTGACATCATCCTCCCAAGGCTTCAGAAGAGGCAGGTTCTAGAGGAGGCTGAGCTGCTCGATCCACGTATCAGTGCCCTGGAAGAAGACCTGGATGAGGTGGAGtccagtgaagaagaagaagaggaggaggaggagaagTGCAGGCAGCCAGAGCCACACAGACGGAGTTACAGAGATTTAGATAGACCACGCAGATCTCCATCTCCTCGCTACAGACGAAGCCGCTCGCCTAGAAGacgAAGCAGATCACCGAAGAGACGAAGTCCTTCTCCCAGACGGGAGCGAGAGCGCGATCGCCACCGCAGTAAGAGTCCACGCAGACACCGCAGCAGATCCAGAGACAGGAGGCACCGCTCCAGATCTCCAGGTCATCACAGAAGCCACAGGCACCGCAGTCACTCTAAATCACCAGAGAGTCGCTCAAAGAAGAGTCACAAGTCGAAGAGGAAATGAATGTCACaggagttttttgttttgttttgtttttttaataaaattcacttttattattgCTTCTGTCAGTAATGTAAAAATCCATGTTGTGAATTTTCTTATTCGCTCATTAAATCCACAAATGTTTTTGATGCTATCTGACCTTTTACTTGAttcctttttacttttattcaccTCAAACAATTTTATTCTGTTCTAGCAGTCCAGTGTTTATCAGGTTTATCTGATAACCTGGCAATTATGAATCAGCTTAAATAAGCCATTGTTCATGTTGTTCATCAGTTACTTCATATTACATTAAAGTagcaaaaacagtgttttaaaaaaattacaaataaatcgttttttttttttaagtaccactTGTAATTTATAAtgccctctgctgcctgcaagATGAATTGCAATTGAattgaacagattaaaaactctTGCCTGCCCC

Function

symbol description
prpf38a Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2-type precatalytic spliceosome. Orthologous to human PRPF38A (pre-mRNA processing factor 38A).

NR:

description
pre-mRNA-splicing factor 38A

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component

KEGG:

id description
K12849 PRPF38A; pre-mRNA-splicing factor 38A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312071.1 True 1508 mRNA 0.45 10 23063527 23071529

Neighbor

gene id symbol gene type direction distance location
pomgnt1 pomgnt1 coding downstream 1446 23048586 ~ 23062081 (-)
pik3r3b pik3r3,pik3r3b,LOC107717145,LOC107692397,LOC107594617,LOC107675943,LOC106584012 coding downstream 98672 22773126 ~ 22964855 (-)
LOC113538473 NA coding downstream 511228 22547254 ~ 22552299 (-)
adcyap1r1b adcyap1r1b,LOC108271541,LOC108441855,LOC107731652,LOC107717143,LOC107692394 coding downstream 549469 22484092 ~ 22514058 (-)
LOC117599264 zc3h3 coding downstream 670734 22390253 ~ 22392793 (-)
mpl mpl coding upstream 15078 23086607 ~ 23095386 (-)
tie1 tie1,LOC107731644,LOC107684058 coding upstream 27424 23098953 ~ 23116279 (-)
LOC113538427 tmem125,LOC108440199 coding upstream 96849 23168378 ~ 23178559 (-)
fam183a fam183a coding upstream 119359 23190888 ~ 23193503 (-)
mier1a LOC108272166 coding upstream 395852 23467381 ~ 23477206 (-)
G32244 NA non-coding downstream 20765 23042531 ~ 23042762 (-)
LOC113538262 NA non-coding downstream 68338 22990447 ~ 22995189 (-)
G32157 NA non-coding downstream 277837 22711213 ~ 22785690 (-)
G31934 NA non-coding downstream 494691 22565292 ~ 22568836 (-)
G31916 NA non-coding downstream 502919 22538323 ~ 22560608 (-)
G32629 NA non-coding upstream 607253 23678782 ~ 23683686 (-)
G32686 NA non-coding upstream 948596 24020125 ~ 24020779 (-)
G32777 NA non-coding upstream 1146964 24218493 ~ 24218937 (-)
G32781 NA non-coding upstream 1187777 24259306 ~ 24259855 (-)
G32840 NA non-coding upstream 1411134 24482663 ~ 24482990 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other downstream 469666 22582303 ~ 22593861 (-)
ccdc17 ccdc17 other downstream 481584 22572432 ~ 22581943 (-)
raver2 raver2 other downstream 1532099 21449546 ~ 21531428 (-)
lepr lepr other downstream 1745704 21281364 ~ 21317823 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 2634202 20359722 ~ 20429325 (-)
dmrt2b LOC108271504 other upstream 150764 23222293 ~ 23225548 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 543925 23615454 ~ 23632013 (-)
nbeal1 nbeal1 other upstream 2608561 25680090 ~ 25738817 (-)
LOC113538393 NA other upstream 2829201 25900730 ~ 25907994 (-)
slc19a1 slc19a1 other upstream 3009620 26081149 ~ 26105675 (-)

Expression


Co-expression Network