LOC117599288


Basic Information

Item Value
gene id LOC117599288
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6151401 ~ 6160674 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312125.1
AAGCGAGCGCGCTGTAACACCATCGAGAATGAAGGTAGCTGCGATCGGCCAGTGATGTAATCGCTCCTAGGCATCTGGGTATTAGCTAAGGTGTTTGCATATCCGCGACAACGCCCAGGGCGGCGGCTACTCGCACGAATCAACTCCAACTCTTTCTGTCGCCGCTGAAATTAACAGGCATTCTACAGGGCCATTGACGTCACCAGGACTATGGCAACCATCGCAGGATGACGGTTTCCCTCTCCAATCACGCTGACGAAGGGAGTGGATTTCGTCGTCTGGTCGAGGACACAGAGCCAGAAAACAGTTACACAGAGGGGATGAAGATGGGGATCTTAAGCATCGTCAAAGATGATGTTGCCACCATCCATTCCAACCCAAATTGTGGTTTGTACTCCCTGCATTTGCATTCCCAATGGGAGGTCTATACAAGTTTCTGGtgcaggGTGAAAGTCCATGTATTTGGAAATAGTCCTTCACCCACAGTTGCAATCTATGGATTTCATCATGCAGCTCAACATGGAGAACCTGAGTTTGGAAAAGATGCAAGAGCCTTCATTGAACGTGACTTTTACGTGAATGACAGTTTAAAGTCAGTGCTCACCGCCGAAGAAGCAGTCTATCTGTTGAAAAGTACTCAAGAGATGCTAGCAAGTTCTTGCTCAAGCAACTTGAGATTTCATAAAATGGCATCCAACAGTCCTGCTATGATGGATGCACTCCCAGTTGAAGATCATTTGAAAGACCTCAAGGATATTGTTCTGGAAATAGATACACCACCTATACAAAGGAGCCTTGGGCTGAGCTGGAATCttaaaacagacattttgacacaGAAGAGAAGCCTTTCAAGTGTAGAGGTGTCTTGGCAACTGTTAACAGTGTCTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312125.1 True 890 mRNA 0.47 6 6151401 6160674

Neighbor

gene id symbol gene type direction distance location
rims4 rims4,LOC107666126,LOC107708122,LOC107696477 coding downstream 32833 6055822 ~ 6118568 (-)
psmf1 psmf1,LOC107580402 coding downstream 162029 5982584 ~ 5989372 (-)
chd6 chd6,LOC107666014 coding downstream 287968 5761737 ~ 5863433 (-)
pigu pigu,LOC107554168,LOC107596774,LOC107666169,LOC107708084 coding downstream 471442 5659803 ~ 5679959 (-)
osgn1 LOC108272601 coding downstream 500116 5638596 ~ 5651285 (-)
tomm34 tomm34,LOC100305086 coding upstream 20354 6181028 ~ 6195188 (-)
eif6 eif6,LOC107723919 coding upstream 144498 6305172 ~ 6313411 (-)
mmp24 mmp24,LOC107723920,LOC107587563,LOC107696473,LOC107666082 coding upstream 163440 6324114 ~ 6362835 (-)
fam83c fam83c coding upstream 239742 6400416 ~ 6413610 (-)
LOC113532448 LOC108272058,LOC108411580,LOC107696472,LOC107723922,LOC107708114,LOC106582647,LOC107587565,LOC107666149,LOC107595422 coding upstream 273245 6433919 ~ 6462290 (-)
G22470 NA non-coding downstream 2234 6148946 ~ 6149167 (-)
G22367 NA non-coding downstream 107649 6043116 ~ 6043752 (-)
G22345 NA non-coding downstream 161206 5989970 ~ 5990195 (-)
LOC117595835 NA non-coding downstream 260569 5889282 ~ 5890832 (-)
G22237 NA non-coding downstream 280700 5870500 ~ 5870701 (-)
G22478 NA non-coding upstream 69086 6229760 ~ 6229969 (-)
G22539 NA non-coding upstream 122441 6283115 ~ 6283948 (-)
G22538 NA non-coding upstream 137448 6298122 ~ 6301047 (-)
G22650 NA non-coding upstream 461261 6621935 ~ 6622442 (-)
G22695 NA non-coding upstream 514806 6675480 ~ 6675687 (-)
LOC117596222 NA other downstream 74524 6074035 ~ 6076877 (-)
blcap blcap,bc10 other downstream 186218 5956639 ~ 5965183 (-)
romo1 romo1,LOC102788570 other downstream 615341 5532037 ~ 5536060 (-)
LOC113533127 NA other downstream 737315 5405967 ~ 5414086 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other downstream 950189 5111462 ~ 5201212 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other upstream 44610 6205284 ~ 6208666 (-)
G22591 NA other upstream 318728 6479402 ~ 6480011 (-)
mitfa mitf,LOC108424034 other upstream 2099811 8260485 ~ 8265229 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other upstream 2182950 8343624 ~ 8351694 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other upstream 2318700 8479374 ~ 8484181 (-)

Expression


Co-expression Network