LOC113531982 (LOC108272195)


Basic Information

Item Value
gene id LOC113531982
gene name LOC108272195
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11586904 ~ 11612295 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312345.1
GCGCTGATGCGCGCGGGCAGGACGTCAGTGAGGCAGAGCGCGCGGGCCACCCGGAGCACTGCTCTGTCATTCAGCCCGTGACTCAGTGAGGCAGCTACACGGAGCTATGGCCGAGGAGAGCCGCGGAAAACGGAGGAAACAGGCGAACCCACGACGCAACCGAGAGTGCTCTCTGGGCTCTGAGGGAGAGGAtgaggtgtgtgcatgggggACGGATGCGCAGgatgaaagaaatgaacaagATAAGATGAGTCTGACACCCAGCGAGGGCACAGAGGCTGGAAGTCCCTCTCGTTCCACCCGCGCCCACAGTCTGAGCCCCTCGCTGGAGCACTGGGACGAGACTGAGAACACGACCCTCCCAAGTACCACCGGAGAAAGAGAACAGTGCATACATAGAGAAAGCTGGAAATACGATGCCAACATCtgcaaacatttgaaaaatccTCCTCAAACACAGAAAGATGCCCGTGTAGTGGAAGACTGGACTGGGTATGACTTCCTCATGCAGCTGAGAAAAGTTTCCCACCTTCCTGACTCACGACACAGCCAGCAACACAACGGCTCCATCACTTCCTACCACACAGCTGGTGTGCAGGACGACACACTATCCATCCTGTCACCAGGAGTTCAGGAGTCACCTGAGGGAAAAGACGCATACCCTGGGAGCCCTGATCCTACAGAGACAGAAATGCAGGTGTGTCCATTTTGCCAGCGGTCATATCAGCGGGGCACCTATCTCAGAGAACACATGAAGTTATGccaggagagggagggagggcaCACTGTGTGTCCACTCTGTGGCTACAACACTCCGTACAGGGCACAGATGGAGCGGCACATGGCACTTCACGCCCAGGTTAAAGAGAAGaattCTGTGTCTGACCCCAACATGGAAAACCGGAAGTTTAAGTGTACACAGTGTGGAAAAGCCTTTAAATACAAGCATCATCTTAAGGAGCATCTGCGTATTCATAGTGGTGAGAAGCCCTACGAGTGCTCCAACTGTAAGAAACGTTTCAGTCACTCAGGCTCCTACAGCTCACACCTAAGCAGCAAAAAGTGTCTCAGTGGGGGTGGCTCAGGGAACGGCACATATTTCAATGGCCACTCTCACTCTGCCTACCTCTTCCAACCCCCAACGTCACCCCCTGTAGTTGGAAGCAGGAATGGTAACAGAGGGAAGAGCTCTCCTTATGCCACACTGAGTCATTGCTTCACAGAGCAACTAGCCAATCAGGGACAGGAATCTATTGCTTCTGCACTCCGAGCTTCGGATCTAAGCAGACCTTGGGATTCTGTTGCAGCCATGAGGATGGGGGTGTTAAAAGGGACTACACTTTTGCCCTTACTGCACTCTGGTGGCAAGTTTGAACAGCTCCTGCAGGAAATGCTCCGAAAGGAAGTGGGGAAGGATGAGCAGCTAGGAAGCAGGCAGGACAAGGAAGACGAAGACACGTCAGACAGAAGAGAGGGGAAAAGTGATATGCCTGTCTGTGCCGTATCATGTCAGCGTTGCTTCCAGCTGTTTCCAAATGAAGTTGTTCTAAAGCAGCATGAGAGATATCTGTGCAAGGGAAAAGATGAGCAGAACGCTGCACAGATGCACTGCATCAAAGATGGATCACCGCTCAACTTCTCACGTGTCTCCCAGAAGCTTTACGACACACAGAAAACTCCCACCACCCCTAATGGAATGACCAGACAGCTCTCTTCTCCACAGCGGGCATCCTGGCATTCACTTCCACAGCAGCTCCTTGTGCCACTGCAGTCACCTTTGCACTTCCGCTCTGATCCTGCACATGCCTTCTGGccaaacagaaagacagacagccCTGGAAACTCCAGCATCATGAGCCCGACCTCGCCCTCACTACAGGAACACCGACGTCCAGGTTTCGGCTCTCCATCAGTCACATCACCATGCCAGCCTCTTCAACAGAGACCATCACCTAGATCAGAGGGTTCTCAGAGTGAACCTCTAGACCTCTCCATTCCCAAACCTCGGAAAGGCTCTGAGCCTGGCTCAGACTGCAACGGCAGCTCACCACATACAGACCGCAAGGATGCAGAGCATATGACCAGAAGGTTAAGCCCACTATCCCATCACGAAGTAGGCGGGGCCTATAGACCTTTATTTGGAAGTGCAGTTTTTGGCAACTACCCCTTTTTTAATCCTATTATGTCAAGTGGTCTTGCAGCAATGGGGCGTAATGGGCTGACGTCACTTCCTCTAACGCCACCAGCACCCAGTCCGGGGTTTCTCTCCCCCATAGCATATATGATGGAGCCAGAGTCTGAGACCATGCAAAGAATGCATCAAGAGATAAATATCATGGGTGATGCCAGAACTCGAGGAAGTCTGGACTACCTTGCTCTGATGGAGGAGGGGCTGGATGGAGACCATGGTCCAGGGAGAAAGAGACTCAGGAAGACAGAGGAAGGATTATACGCCTGCGACATCTGTGACAAAAGCTTCCAGAAGAGCAGCTCTTTGCTGCGCCACAAATATGAACACACAGGAAAGCGGCCACATGAGTGCCAGATCTGTAAGaaagcatttaaacacaagcaccaCCTGATTGAGCACAGCCGGCTTCACTCTGGAGAAAAGCCCTATCAGTGTGATAAATGTGGAAAGCGTTTCTCACACTCTGGCTCCTACTCACAGCATATGAACCACCGCTATGCTTTCTGTGGTCGAGACAATGACCCAGATGCCCAGGTAGAGGAGCAGGTTTTGAGGGACACAAGTGTCTACGCAAACTCGCACACCAAGCTTCATCCTGGGACAAGAGACAATCCTCTCATGCTGGACACAGCCACATTCCTCAGTGATTCCAGCCTGGACGGGGCTCCACTAGGATTCAGagcagaagaggaggaggaggaggaggaagaagaagaaaactcaCTTAGTAATCATGCACACAAGAGTAGGGTGGAGAGAAGAATGGAGATAGAGGACAGAAGCAGACATCTGGAACAGTCAAGTGAAgatagtaagaaaaaaaatgaaaaggaggCTAAAGGACAGGACACAAAAAATGATCATCACAGCAGAGAGATTATAGTGGAACATGATGAGGAACAAAGAGACATGAATCAAGAGACAGTATGAATGCTCTGCACAGAGAACTTATTAAGTTTTGAGTCAATTTGCCAAAGATGTGTAAAAACACAAGGACAGTATTGTACAGAACAGAATTTGAATGCCTTAAAGTTCCGCCTCGTGCCTTTGGATCTATGCTGATTCAAGACAATAATGCAAAACATGCACACCATGTGTTACTATGAATACAGTGACATACACGCACAAGGGCTAGGTAACCAAAACTGGACTGTATATTTGGTGCTCACTAAATACTGCATTTTCTAAAGCATTTTTTGACCAGAGATATCATCATCAGAGAAGTACACAGGCAACCCAATCTATCACAAACacagtataatatttttaagaaatgaAAGCCACTTTATCTTCACATAAAATTACACGATTTTTCTGTGGATTAACCCAGGTAAACAACCACACATTCACTTAAACGAAATTATAGcattcattttcttcatttcatttttgtcccATTTTCCTGAAATCCAAAAGTATTTGCACTCTCTAATGTCAAGTTGCCTGTGTTAAAACATGCGTTCTGTGCATCATGCCTCTGTGATAGATTCTAGGATAGAGAAAGAAGCAAATGGTCTATGCAGGCTGTCAAACTCTGAAAAACCTGCTACATATGAGAACTAAACATATTGTTGTTGCATACTGCATTGTTGCATGAGACCGCAGAGAGTGAGAAATATGCTATTACTGAGGTTTGCTAATGTGTGGTGTTTAGCTATGCAAGGGTTCAGATCAATGCACAGCACCTGTAGCATTCAACTGCCCAAGCAGAAAATGGTGCTTTTTCCAGGTTTGGTTCCAGCTTTATCCTGTTTCATAACTGTTTAAGtaaagtcagtgtttttctgtcaACATGTAAATGTTGCCAAATGTATATCCCTTTAAGCTATTTAAATATTCTGTCTAAATTGCATCAGTGTTGCTTTTATACAGCAACACTGTACCATTTTATAGaattattttaccattttatagaATTATTTGTTTGTGCATACAATTACTTACAGTCTAATAAAGTTGTACATATCAA

Function

NR:

description
PREDICTED: zinc finger E-box-binding homeobox 2-like isoform X1

GO: NA

KEGG:

id description
K23560 ZEB2; zinc finger homeobox protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312345.1 True 4160 mRNA 0.47 9 11586904 11612295

Neighbor

gene id symbol gene type direction distance location
mars1 mars coding downstream 50866 11522121 ~ 11536038 (-)
mbd6 mbd6 coding downstream 72274 11500588 ~ 11514630 (-)
soat2 LOC108272126,LOC108431801,LOC107734612,LOC107681296 coding downstream 145511 11428806 ~ 11441393 (-)
tox2 tox2,LOC107681298,LOC107666148,LOC106565275 coding downstream 417854 11069885 ~ 11169050 (-)
cbfa2t2 cbfa2t2,LOC107681292,LOC107740270,LOC107666150 coding downstream 575092 10986308 ~ 11011812 (-)
gli1 gli1 coding upstream 6676 11618971 ~ 11660989 (-)
rbm19 rbm19,LOC100304870,LOC107666967 coding upstream 370667 11982962 ~ 11994574 (-)
epha2a LOC108271798,LOC108427555 coding upstream 384668 11996963 ~ 12008819 (-)
LOC117596078 NA coding upstream 414433 12026728 ~ 12028660 (-)
tardbp LOC108271795,LOC108427558,LOC107555974,LOC107713527 coding upstream 423337 12035632 ~ 12041298 (-)
G25478 ddit3 non-coding downstream 52379 11517488 ~ 11534525 (-)
G25484 NA non-coding downstream 86396 11499245 ~ 11500508 (-)
G25476 NA non-coding downstream 128714 11457974 ~ 11458190 (-)
G25320 NA non-coding downstream 257348 11326826 ~ 11329556 (-)
LOC117599085 NA non-coding downstream 324600 11257764 ~ 11262304 (-)
G25553 NA non-coding upstream 84784 11697079 ~ 11698078 (-)
G25570 NA non-coding upstream 125272 11737567 ~ 11738741 (-)
G25575 r3hdm2 non-coding upstream 140192 11752487 ~ 11772290 (-)
G25723 NA non-coding upstream 325320 11937615 ~ 11937803 (-)
LOC117596184 NA non-coding upstream 600693 12212988 ~ 12214802 (-)
kif5ab kif5a other downstream 101435 11442471 ~ 11485469 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 652740 10916042 ~ 10934164 (-)
G24760 NA other downstream 1096609 10489293 ~ 10490295 (-)
G24516 NA other downstream 1718626 9863367 ~ 9868278 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other downstream 1860853 9715516 ~ 9726051 (-)
LOC113526127 LOC108272031,LOC108431803 other upstream 74450 11686745 ~ 11764135 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 1881217 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 2019967 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 2028086 13640381 ~ 13647177 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 2252649 13864944 ~ 13907189 (-)

Expression


Co-expression Network