gfi1ab (LOC108271917)


Basic Information

Item Value
gene id gfi1ab
gene name LOC108271917
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20025854 ~ 20032781 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314524.1
ATGGGTACCTGCGGTCCGTCTGCTTTGCGGGCTCAATGCGGGGTTCTGTTCCTACTGTTCCTCCAGCCAGGAGGATGCAGGGGGATGAGGGGGGGATTGACGACAGCAGATCACCGGCGTCCCGATTCTGCACTCAGGGAGAACAAGGCGTCTCTGTTCCTCATGCACGTGCTCGCGGAAAAAGCAGGCGTGAAACTCGAGAGGGCGGTGCAGTGCAAGTGCAGCCGTGTGCCACCACTTGCTGTTTTTCTGCTAACTTGTAGGAAAAAAGGATATAGTGAAGAACAGAAAAATGCCTCGGTCTTTTTGGTGAAGAGCAAAAAGGCTCACAGCTACCACCAGCCGCGGAGTTTAGAGGACAACTACAACAGACTCGAGACCATTTTAGCTCATATCTGCGCAGACAGTACGAGTGCAGAAGCAGGGGAGGTGTGTGTGGATGAATGCAGTAGAGAGGCGGTGGAAGTGTTAGCGCTCGCGGACTCCGCCGCTGCTGCCTCGCGCTCTcctctcagcagcagcagcagtgtgtgtgagcgctcTTCAGACTATGAGGACAGCTGGAGGCCTCCATCACCCTCTGCATCACCAGACTCTGAAAAGTCATTTTCACCGGGTGCTGATGAAACCCAGCCGTTTGCGGTGCCCTTCGAGCCATGGAGCAACAACTATTCAGGGTCTGAGATGAGACAGCTGGTCCGGCAGAACTTTAATCACCATCGTCCTTCCCTAAATTATTATGGAGAAAGAGTGATTGGATCTTCTCTTTTTGGTGAAAGGGGATCTAGCACGAGTATTTATGGCAATTATGAGTCGACTACAAACCTATTTGAGCGGCCTGCTGCTGCCCCTGGACTGTATGTAGACAGGGAAATTCATAGACCTGAGATAAAAACAGACACAGCCGGGCTGTGCACTCGCCTCGTGTTGAATGGAGCCTTCAAGTGCATCAAATGCAGCAAGGTGTTCTCTACTCCACATGGTCTGGAAGTACATGTCCGGAGGTCCCATAGTGGAACGAGACCCTTCGCTTGTGACATTTGTGGGAAAACTTTTGGACATGCAGTCAGCCTGGAACAGCACAGATCTGTTCATTCTCAAGAGAGGAGTTTTGATTGTAAAATTTGCGGGAAAACTTTCAAAAGATCCTCTACTCTGTCCACACACCTTCTCATCCATTCCGATACGAGGCCTTACCCGTGCCAGTACTGCGGCAAGAGGTTTCATCAGAAATCAGACATGaagaaacacacatttattcacacagGAGAGAAGCCTCACAAATGTCAAGTATGCGGCAAAGCTTTCAGTCAGAGTTCAAATTTGATAACACACAGCCGAAAGCACACTGGTTTTAAACCTTTTGGTTGTGACTTGTGTGGAAAAGGCTTCCAGCGCAAAGTGGACTTGAGGAGACACAAGGAGACGCAACACGGACTGAAATGAGGAATGAATCAGCTTCTAGAAAATTTCCAGTCAACAATCTCTGGACAGTTGGTTGCCTTACCAAGTGCTGACCTGCATCACTGTAAAATCTCCAGGGCTGAATTAAAGCAGGCCTAACTGCTCACTTAATGGAACCTAGTGTAGTCTGCAATTAACATGACCATATTAGCATGAGGTTACTCGACCTCTTTAGTTCTGATCCATTTACAACAATTTTGGCTGAGGTCCTTTTAACCCTATACAGAGTCTGTGCGTCCACGAAGCCTAGGTACACTCTCacaaataaaggtaccaaactgtacttttacCTTGTGGATGTGATGGTACCATAAAGGATAAGTCTTTCCTAGCTTTAGTTTTTACCTGAGACGATGCAGGTGGCATAGTGTTAATCAGCTTtcagagtaaagctttaaaagtaTGTCAGCGGTACTTAAGGTCCAGTTGTGCACCTTTGTTACCATATTGATGTTTCCAGGTTGTATACCAAAGGTGCAAAGGATGACATCAGATAATCATGCCGATGACAAAGAAAAGTATAGTTTGGTACCTGTATTTTTGAGaatgtaggtgttaattctaCACTGGGAATTTTTGTAGTAGGCCATGGGTCTATAAGCTGACAGGGGATTCCCAAGCAAGTGTTTATAGTGTAGGCTAAAGAGATTTCCATGATTTTAATGTTTCCaaaatgctgtttgtgcttTGTGTAGCCTAAATCGTGAGTCAGAAGTCACCCAGCAGGTCTGGCAGGATTGGGCAAGATGCACAGCAAAATCCCAAGTGTGGATTGAAATCAGAGTTGAATAACTACCACTTTGAATTAATACCTACTACACTGAATTACCACTTCCACCGTTTATTTGTGTCCTGCTTTACGTTTAGAAACCCGGGTTAGTTGTTCACCACTGGGGCTTTAGCTGTGGGATGATATGGTGTAGGCTTAAGACCATATCAGGAGTGCTTTACTCAAACCAATACCACAAGGGCGGTGCTACAGGAACCCAAAATATTATCACCAAAACAGTCCAGGAGGCAGTAGAGTTAGTAACGGCCGCGGGAAAGGACACAGCTATCAGAGGCAACATCAGCTGAGCTGCAGGAAATCAGCGCTGCTCACAGTGACGCCATGCTGCTCCTCTGCTGGCAAAACACGCACTACAATAACCACGAGATTTAATCCAAACCCAGACTGTTTGTGTAGTACACTGTAGAAACCTCGACTGATTTGTTGACTTCACAAATATTTTTCCACTCTTTCAACTCGCCTACCCAGACGTGTTTGTCCTCTCcgtttctattattattattattattattattattattattattttacatacatttgcaCATGGGTTAGACAGGTTGGACCCTGCAACTCACCTGCAGTTTAAACCTTTTAagcttatttaaatatataacatgctgaaatatttgtttttaacaataaaccttatttatttataattacaattattatttggctgaattaaaatgattaaaagcaaTACTTGACTTATTGCAATGAATAATGCTGTGGTTTGTTACGCGTATTTCTTTGAAAAAGGGAAAATCAGGTTTGTTCGGAAATATATCTCAGTGCGATGTTTAATATCTCAGTGCGATGTTTAATATCTCAGTGTGATGTGTTGCAGCATCGCAGCTTTCTAATAAAAAGCAATGTTCAATTCA

Function

NR:

description
zinc finger protein Gfi-1-like

GO:

id name namespace
GO:0007422 peripheral nervous system development biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09223 GFI1; growth factor independent 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314524.1 True 3138 mRNA 0.44 7 20025854 20032781

Neighbor

gene id symbol gene type direction distance location
tomm70a tomm70 coding downstream 26694 19986024 ~ 19999160 (-)
tbc1d23 tbc1d23,LOC107574489 coding downstream 42557 19956717 ~ 19983297 (-)
bcl6aa bcl6 coding downstream 473161 19544152 ~ 19552693 (-)
trnap-ugg_1 NA coding downstream 645342 19380441 ~ 19380512 (-)
im:7152348 NA coding downstream 649690 19372430 ~ 19376164 (-)
evi5b evi5,LOC108427692 coding upstream 6169 20038950 ~ 20101198 (-)
dipk1ab fam69a,LOC108272054,LOC108427695,LOC103026455,LOC107590645,LOC107659006,LOC107566484 coding upstream 80164 20112945 ~ 20142257 (-)
zbtb11 zbtb11,LOC106576566 coding upstream 113604 20146385 ~ 20156159 (-)
dpt dpt coding upstream 139347 20172128 ~ 20183294 (-)
nme7 nme7,LOC107659027,LOC107731836,LOC107732015,LOC107692347,LOC107590639 coding upstream 174974 20207755 ~ 20246008 (-)
G30270 NA non-coding downstream 39935 19984675 ~ 19985919 (-)
G30255 NA non-coding downstream 101875 19923763 ~ 19923979 (-)
G30246 NA non-coding downstream 111903 19913653 ~ 19913951 (-)
G30236 NA non-coding downstream 139116 19885468 ~ 19886738 (-)
G30088 NA non-coding downstream 412252 19599498 ~ 19613602 (-)
G30320 NA non-coding upstream 71471 20104252 ~ 20112518 (-)
LOC117599142 NA non-coding upstream 164439 20197220 ~ 20199516 (-)
G30412 NA non-coding upstream 166752 20199533 ~ 20207732 (-)
G30421 NA non-coding upstream 213824 20246605 ~ 20246871 (-)
G30422 NA non-coding upstream 214330 20247111 ~ 20247337 (-)
glmnb LOC108272089 other downstream 11760 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 1208656 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 1209042 18794025 ~ 18816812 (-)
trnag-ucc NA other downstream 1209524 18816259 ~ 18816330 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 1830226 18148228 ~ 18195628 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 326941 20359722 ~ 20429325 (-)
lepr lepr other upstream 1248583 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 1416765 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 2539651 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 2549522 22582303 ~ 22593861 (-)

Expression


Co-expression Network