LOC113538524


Basic Information

Item Value
gene id LOC113538524
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22144203 ~ 22150238 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314533.1
CTATTGCATAACTGAAATGTATACATATGAAACATTGGCTTGTTCCTGGTTGATTGTCCTGCTTGTTTGAGGCAGGACCCAAAGTAGAATGTTGTGATGGAATTTTTCTACATTATGATGTCATAAAGGTAAGGCTGCAGTTTTCCCTCACAATGAGCGTTCACTTCAGACCACGTTAAGCCACTGAGGAGGATCGCAGCAAAACACACTGAAGAGGATTGCAGCGTTtctactgaagacaaaactgttACTGACTTTTTTGACCACACGAGAGAGATAACCAAGCTAATGGATATCTTTGTGGATGCCACTGAGAAGGCCACCAGCCAGAATCTGAGAGAAAAGATGAGCCAGAGGACATGCGCCAAGGCTGAAGCTGAGGCTAGGGAACTGATGGGCAGTTTCCTCAAGGATATTGAAGCAAATGACAAAGAACTGATAGAAAGGATCCGCACTAAGGCCGTTAGGGTACTGATGGGAATTTTCCTCTGCGATACTGAGACAAATGACACCTCCATGAagtTCCTGAAAGAGGTGGATGCTTTagcagaggaagaggatgaagcCATCAGTCAGGTcttggaggaggaagagggaaCAATCGACCTGCCACTGGTAAACAGCAATAAGACAGAGAAGACTGTTGAAAACAGCGGGAAtggaaaggagaaaaagaaatggacCAGGAGAGGGACACGAGGCAAAGGAAGGAagataaattacaaaaagtTCCAGGCCAACAAagaagaaggagATAAGGCTGAAGCTGAGGCTGAAGCTGTTTTTGAAGCTGAACCTGATGCTGAAGCTCACACTGATGCTGAAGTTGAGGCTGAAGCTAACATTGATGCTGAAGTTGAGGCTAAAACTGAACATGAGGCTGACGCTGAAACTGGGGATGAAGCTCACATTGATGCTGAAGTTGAGGCTCAAGCTGAAACTGAACATGAGACTGAAGCTGAGGCTAAAACTGAACATGAGGCTGAAGTTGAGGCTGACACTGAAGCTGAAACTGAGACTGAAGCCGAGTCTAAAACTGAACCTGAGGCTGAACCTGACACTGAGGATGAAGCTCACATTGATGCTGAAGTTGAGGCTCAAGCTGAAACTGAACATGAGGCTGAAGCTGAGGCTAAAACTGAACATGAGGCTGAAGTTCAGGCTGACACTGAAACTGAACCTGAGACTGAAGCTGAGACTAAAACTGAACCTGAGGCTGAAGTTGAAGTTGACACTGAAGCAGAACCTGATGCTGAATGTGctgctgaagaaagaaagacggaTGACGCTGAAACAGAGAACAGCACATCTCTGGATGGAGCAAATGGCAATGATGCAGACGAGCCTGCTGAAAGCATCaggaaaggaaatgagaaaaagaaaaggaccaGGAGAGGGACACGAGGCAGAGGGAGAAAGATCAATTACAAAAAGGTCCAGGACAACAAAGcagGGATGCTGAAAGAGGTGGATGATGGAGCGGAGGCCGAAGCTATCGGTGACCTGATGAACATCCTCCTGGATGAGACAGAGGAATCTAATGGCCCATCTCTGGcaggaGAAAGTGGGGAGATCACGATGAGTGCTGACGTTGAAGCTGAGGCTGAAGCCTTTAATGGTTTCCTCACCGTCCTCCTGGACGAGATAAGGGACAAGATCAACCTGCCTCTGGgGATGCTGCAAGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAAGCAGCTCCTGAACGTCTTCCTGGATCAGGCAGGCGAAATGATTGACCTGCCTCTGGgGATGCTGAAAGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCGACCAGCTCCAGAACGTCTTCCTGGATCAGGCAGGAAAAACTTCTGGCCAGTCTCTGGgGATGCTGAAGGAGTTGGATGATGGGGCGGAGGCTGAAGCCATCAACCAGCTCCAGAACGTCCTCCTGGatgagacagaagaaaagatcCACCTGCCTCTGGggATGCTGAAAGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAACCAGCTCCAGAACGTCCTCCTGGATCAGCAACCTGCCTCTGgggaatataaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314533.1 True 2079 mRNA 0.49 13 22144203 22150238

Neighbor

gene id symbol gene type direction distance location
usp1 usp1 coding downstream 97745 22035213 ~ 22046458 (-)
angptl3 angptl3 coding downstream 147482 21993695 ~ 21996721 (-)
atg4c atg4c coding downstream 175994 21957535 ~ 21968209 (-)
foxd3 foxd3,foxd1 coding downstream 318729 21822742 ~ 21825474 (-)
alg6 alg6,LOC107704515 coding downstream 328524 21796560 ~ 21815679 (-)
LOC117599932 NA coding upstream 7470 22157708 ~ 22199634 (-)
mafaa mafa,mafaa,LOC107556987,LOC107591187 coding upstream 168897 22319135 ~ 22322050 (-)
zc3h3 zc3h3 coding upstream 177217 22327455 ~ 22390555 (-)
LOC117599264 zc3h3 coding upstream 240015 22390253 ~ 22392793 (-)
adcyap1r1b adcyap1r1b,LOC108271541,LOC108441855,LOC107731652,LOC107717143,LOC107692394 coding upstream 333854 22484092 ~ 22514058 (-)
LOC117596032 NA non-coding downstream 11505 22130425 ~ 22132698 (-)
G31681 NA non-coding downstream 39792 22104198 ~ 22104411 (-)
G31492 NA non-coding downstream 528528 21615321 ~ 21615675 (-)
G31486 NA non-coding downstream 531381 21569856 ~ 21612822 (-)
G31491 NA non-coding downstream 535036 21607396 ~ 21609167 (-)
LOC117599244 NA non-coding upstream 23113 22173351 ~ 22175740 (-)
LOC117599242 NA non-coding upstream 46356 22196594 ~ 22197668 (-)
G31742 NA non-coding upstream 74147 22224385 ~ 22226660 (-)
G31755 NA non-coding upstream 165568 22315806 ~ 22316006 (-)
G31916 NA non-coding upstream 388085 22538323 ~ 22560608 (-)
raver2 raver2 other downstream 612775 21449546 ~ 21531428 (-)
lepr lepr other downstream 826380 21281364 ~ 21317823 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 1714878 20359722 ~ 20429325 (-)
glmnb LOC108272089 other downstream 2130109 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 3327005 18817127 ~ 18817198 (-)
ccdc17 ccdc17 other upstream 422194 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 432065 22582303 ~ 22593861 (-)
dmrt2b LOC108271504 other upstream 1072055 23222293 ~ 23225548 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 1465216 23615454 ~ 23632013 (-)
nbeal1 nbeal1 other upstream 3529852 25680090 ~ 25738817 (-)

Expression


Co-expression Network