LOC113527743


Basic Information

Item Value
gene id LOC113527743
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9334668 ~ 9335327 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402903.1
CATGGTGGACATGGTGGGCTTTGAAAACTTGACAAGAAAATAAACCTGCACTCTACTGCAGACATACATAGTATCTGTATTGGGTTTATCACTACAGGGAGCTTCCCACTGCCCAATGATATTTAAAAGAGTGTTGATTGTTGGACAGCCTGTGCCAGCTAGAATAGTAGAAGAGAATTTTGATTTCTTTCCAGAAATAAAAagccatgcattttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402903.1 True 216 lncRNA 0.39 2 9334668 9335327

Neighbor

gene id symbol gene type direction distance location
cacna2d2a cacna2d2,cacna2d2a,LOC108271986,LOC108433686 coding downstream 15993 9098091 ~ 9318675 (-)
mst1 mst1,LOC107666157 coding downstream 246641 9074912 ~ 9088027 (-)
si:ch211-161c3.6 NA coding downstream 262062 9063525 ~ 9072606 (-)
gnb1b gnb1b,gnb1,gnb1a,LOC108272010,LOC105895937,LOC107385217,LOC100703896 coding downstream 297335 9012676 ~ 9037333 (-)
rbm5 rbm5,LOC108271979,LOC108433690,LOC107696464 coding downstream 352647 8973169 ~ 8982021 (-)
hyal1 LOC108271980 coding upstream 75027 9410354 ~ 9426556 (-)
hyal2a LOC108271981 coding upstream 93789 9429116 ~ 9432597 (-)
rps10 rps10,LOC107595410,LOC102793608 coding upstream 133213 9468540 ~ 9471356 (-)
LOC113530144 LOC108271967,LOC108433664,LOC107595455,LOC107724522,LOC107744410,LOC107587644,LOC107666045,LOC107696418 coding upstream 165506 9500833 ~ 9509764 (-)
ilrun c11h6orf106,cunh6orf106,zgc:101577,LOC107724532,LOC107595408,LOC107666165 coding upstream 184051 9519378 ~ 9536904 (-)
G24087 NA non-coding downstream 3840 9330480 ~ 9330828 (-)
G24073 NA non-coding downstream 48013 9279922 ~ 9286655 (-)
G23991 NA non-coding downstream 263899 9070406 ~ 9070769 (-)
G23977 NA non-coding downstream 313110 9020069 ~ 9021558 (-)
G23973 NA non-coding downstream 330156 9004289 ~ 9004512 (-)
G24185 NA non-coding upstream 74581 9409908 ~ 9410303 (-)
LOC113532565 NA non-coding upstream 259169 9594496 ~ 9596485 (-)
LOC113532571 NA non-coding upstream 277053 9612380 ~ 9615583 (-)
LOC113532556 NA non-coding upstream 280260 9615587 ~ 9620959 (-)
G24260 NA non-coding upstream 300527 9635854 ~ 9636519 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other downstream 850487 8479374 ~ 8484181 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other downstream 982974 8343624 ~ 8351694 (-)
mitfa mitf,LOC108424034 other downstream 1069439 8260485 ~ 8265229 (-)
G22591 NA other downstream 2854657 6479402 ~ 6480011 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other downstream 3126002 6205284 ~ 6208666 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other upstream 100179 9435506 ~ 9441845 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other upstream 380189 9715516 ~ 9726051 (-)
G24516 NA other upstream 528040 9863367 ~ 9868278 (-)
G24760 NA other upstream 1153966 10489293 ~ 10490295 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other upstream 1580715 10916042 ~ 10934164 (-)

Expression


Co-expression Network