LOC113530116


Basic Information

Item Value
gene id LOC113530116
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12552753 ~ 12553617 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403116.2
CAGAATGACATGCTACCCAGGGTATATGCCATTCCGTCTCAACACTGTTttcgggataggctctggattcactgcAACCCTGGACAGGATCAAGCAGATacggaatgaatgaatgaatgaatgaatgttactGCAATTTATTTGACATGTAGGCTACACAGACTTGTATAAGTCTGCCCAAAACATATCCAACccggaaacaacaacaacaacaacagcaacaacaacaacaacaacaagtcAACAGGAAAGAAACTTTTGAGACACTCCTGgAACCAGTGATTCACTAAATACAACCTGCAAAAGCAGCTACTGTGGAAGGCTATCACCCTTAATAACCACCCTTTATAACcaaggtgagcagaaaagcatctcagaacgcacagcATGGAAAACTttaaggcagatgggctacaacagcagaagaacatatcagattccactcccattagccaagaacaggaatctcagGCTCCAGTGAGCTCccagaaactggacagctgacagTTAACCTTCTGTGGTCTAACCTTCCTTTTGTGTACACTTGTGTATAT

Function

GO:

id name namespace
GO:0006793 phosphorus metabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0016310 phosphorylation biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00030 Pentose phosphate pathway
ko00500 Starch and sucrose metabolism
ko00680 Methane metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403116.2 True 554 lncRNA 0.43 3 12552753 12553617

Neighbor

gene id symbol gene type direction distance location
igfn1.1 LOC108272198,LOC108427574 coding downstream 9777 12519735 ~ 12542976 (-)
LOC113530099 igfn1.3,LOC107713484,LOC107561018,LOC107708174,LOC107666972,LOC107678151,LOC107549306,LOC108271616 coding downstream 33898 12502268 ~ 12518855 (-)
LOC113530111 LOC108271575,LOC108427572 coding downstream 83073 12447437 ~ 12469680 (-)
zgc:66479 NA coding downstream 109092 12439663 ~ 12443661 (-)
tarbp2 tarbp2,LOC107713493,LOC107666976,LOC107708175,LOC107561017,LOC107680718 coding downstream 114688 12432210 ~ 12438065 (-)
grm4 grm4,LOC108272196,LOC108427575,LOC107708172,LOC107716363,LOC107549321,LOC107569297 coding upstream 15083 12568700 ~ 12730578 (-)
im:7151449 NA coding upstream 211831 12765448 ~ 12776957 (-)
LOC113526469 magi3,LOC108427579,LOC107569295,LOC107668158,LOC107729719,LOC564220 coding upstream 236107 12789724 ~ 12902024 (-)
lrig2 lrig2,LOC107729721 coding upstream 351495 12905112 ~ 12923987 (-)
si:dkey-166d12.2 LOC108271835,LOC108427581 coding upstream 396068 12949685 ~ 13031045 (-)
G26124 NA non-coding downstream 50666 12501698 ~ 12502087 (-)
G26117 NA non-coding downstream 66799 12475147 ~ 12485954 (-)
G26085 NA non-coding downstream 276699 12275235 ~ 12276054 (-)
G26082 NA non-coding downstream 282498 12269874 ~ 12270255 (-)
G26077 NA non-coding downstream 282941 12264692 ~ 12269812 (-)
G26134 NA non-coding upstream 3983 12557600 ~ 12558161 (-)
G26138 NA non-coding upstream 7415 12561032 ~ 12561243 (-)
G26137 NA non-coding upstream 10173 12563790 ~ 12566060 (-)
G26385 NA non-coding upstream 240621 12794238 ~ 12794439 (-)
G26387 NA non-coding upstream 247390 12801007 ~ 12801233 (-)
LOC113526127 LOC108272031,LOC108431803 other downstream 788618 11686745 ~ 11764135 (-)
kif5ab kif5a other downstream 1067284 11442471 ~ 11485469 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 1618589 10916042 ~ 10934164 (-)
G24760 NA other downstream 2062458 10489293 ~ 10490295 (-)
G24516 NA other downstream 2684475 9863367 ~ 9868278 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 939895 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 1078645 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 1086764 13640381 ~ 13647177 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 1311327 13864944 ~ 13907189 (-)
G27107 LOC108272123 other upstream 1496784 14050401 ~ 14058445 (-)

Expression


Co-expression Network