LOC113534445


Basic Information

Item Value
gene id LOC113534445
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10966696 ~ 10984007 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403497.2
TACCAGACTTAACCGCCAGATGGCAGCAATGATCTGTGTAGCACATGCAGGGCCCGGTCCCATCCCCACTGCAGGCATATCGCTCGAGGATGAACTTTGTGGATGTTTCCACTGCACCTGTGGAGAAACTGGAACAGGTCAGAAAGTACAAGTAATTAGCcacaaatgcaataaatCATCATCATTTTTGGAGAAGGAGTATAAAGCCACTGGAGAAGAACAGAGTCAGTCATGGTGATGTGCGTAATTTCAACAATTTCAGCTCtccaagaaaacagaaaagGGCTGCTCTGCTCCTCCACGGCCTCCATGGCACACTGCAGAGACATCTGAAGAGAGAGCAGCTGGCTGGACGTCTCCCTCAGCATAAAGCGTGTCACAAACTGCCCCAACACGGACGAGCC

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403497.2 True 404 lncRNA 0.50 3 10966696 10984007

Neighbor

gene id symbol gene type direction distance location
snrpb snrpb,LOC108272150 coding downstream 56212 10906195 ~ 10910484 (-)
ddx27 ddx27,LOC107553908,LOC107587605,LOC107681294 coding downstream 62751 10888412 ~ 10903945 (-)
znfx1 znfx1 coding downstream 81673 10874924 ~ 10885023 (-)
LOC113532783 cdh22,LOC107553911,LOC107666158,LOC107587604,LOC107681302 coding downstream 223251 10552911 ~ 10743445 (-)
gcnt7 LOC108272018,LOC108272017 coding downstream 627369 10335393 ~ 10339327 (-)
cbfa2t2 cbfa2t2,LOC107681292,LOC107740270,LOC107666150 coding upstream 2301 10986308 ~ 11011812 (-)
tox2 tox2,LOC107681298,LOC107666148,LOC106565275 coding upstream 85878 11069885 ~ 11169050 (-)
soat2 LOC108272126,LOC108431801,LOC107734612,LOC107681296 coding upstream 444799 11428806 ~ 11441393 (-)
mbd6 mbd6 coding upstream 516581 11500588 ~ 11514630 (-)
mars1 mars coding upstream 538114 11522121 ~ 11536038 (-)
G24623 NA non-coding downstream 795521 10170970 ~ 10171175 (-)
G24620 NA non-coding downstream 798227 10168211 ~ 10168469 (-)
G24617 NA non-coding downstream 805455 10161032 ~ 10161241 (-)
G24611 NA non-coding downstream 814531 10151817 ~ 10152165 (-)
G24572 NA non-coding downstream 1027653 9938256 ~ 9939043 (-)
G25184 NA non-coding upstream 37516 11021523 ~ 11021725 (-)
G25185 NA non-coding upstream 38432 11022439 ~ 11022641 (-)
LOC117599085 NA non-coding upstream 273757 11257764 ~ 11262304 (-)
G25320 NA non-coding upstream 342819 11326826 ~ 11329556 (-)
G25476 NA non-coding upstream 473967 11457974 ~ 11458190 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 32532 10916042 ~ 10934164 (-)
G24760 NA other downstream 476401 10489293 ~ 10490295 (-)
G24516 NA other downstream 1098418 9863367 ~ 9868278 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other downstream 1240645 9715516 ~ 9726051 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other downstream 1524851 9435506 ~ 9441845 (-)
kif5ab kif5a other upstream 458464 11442471 ~ 11485469 (-)
LOC113526127 LOC108272031,LOC108431803 other upstream 702738 11686745 ~ 11764135 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 2509505 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 2648255 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 2656374 13640381 ~ 13647177 (-)

Expression


Co-expression Network