LOC113537313


Basic Information

Item Value
gene id LOC113537313
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13238704 ~ 13238806 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403751.2
GTTCTGTCTAGCGCATATACTAAAATTGGAATGATACAGAGAAGATTAGCATGGTCCCTGCGCGCGCAAGGATGACACGCAAAATTgtaagtggtgtgtgttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403751.2 True 103 ncRNA 0.44 1 13238704 13238806

Neighbor

gene id symbol gene type direction distance location
rhoca rhoc,LOC108427591,LOC103035456,LOC108271788,LOC105908082,LOC107729745,LOC107668165,LOC105902219 coding downstream 6964 13214941 ~ 13231740 (-)
capza1a capza1,LOC108271791,LOC103046653,LOC106566046,LOC105908306,LOC106582739 coding downstream 49155 13177828 ~ 13189549 (-)
st7l st7l,LOC103035765,LOC106582738,LOC106566045 coding downstream 65034 13161489 ~ 13173670 (-)
slc2a1b LOC108427584,LOC108272033,LOC103036684,LOC106565867,LOC103355644,LOC106518313,LOC108231650 coding downstream 179937 13042395 ~ 13058767 (-)
si:dkey-166d12.2 LOC108271835,LOC108427581 coding downstream 207659 12949685 ~ 13031045 (-)
si:ch211-105j21.9 NA coding upstream 251388 13490194 ~ 13493259 (-)
tspan2a NA coding upstream 277374 13516180 ~ 13530635 (-)
ngfb ngf,ngfb,LOC103031633 coding upstream 294175 13532981 ~ 13544134 (-)
rplp2 NA coding upstream 388162 13626968 ~ 13629546 (-)
acvr1bb acvr1bb,LOC108271957,LOC108427611,LOC107690814,LOC105017213,LOC107686786,LOC106583225 coding upstream 468648 13707454 ~ 13727074 (-)
G26613 NA non-coding downstream 62545 13175077 ~ 13176159 (-)
G26610 NA non-coding downstream 69042 13169253 ~ 13169662 (-)
G26585 NA non-coding downstream 132618 13104457 ~ 13106086 (-)
G26570 NA non-coding downstream 167881 13070595 ~ 13070823 (-)
G26387 NA non-coding downstream 437471 12801007 ~ 12801233 (-)
G26788 LOC108271946 non-coding upstream 271570 13510376 ~ 13568936 (-)
G26970 NA non-coding upstream 408641 13647447 ~ 13694820 (-)
G26985 LOC108271615 non-coding upstream 445317 13684123 ~ 13685782 (-)
G27016 NA non-coding upstream 549987 13788793 ~ 13791366 (-)
G27043 NA non-coding upstream 597024 13835830 ~ 13836482 (-)
LOC113526127 LOC108272031,LOC108431803 other downstream 1474569 11686745 ~ 11764135 (-)
kif5ab kif5a other downstream 1753235 11442471 ~ 11485469 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 2304540 10916042 ~ 10934164 (-)
G24760 NA other downstream 2748409 10489293 ~ 10490295 (-)
G24516 NA other downstream 3370426 9863367 ~ 9868278 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 254706 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 393456 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 401575 13640381 ~ 13647177 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 626138 13864944 ~ 13907189 (-)
G27107 LOC108272123 other upstream 811595 14050401 ~ 14058445 (-)

Expression


Co-expression Network