LOC113538262


Basic Information

Item Value
gene id LOC113538262
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22990447 ~ 22995189 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403825.2
caaagtcGGACGCTTCTATACTGTATCAAATTGACAGCTGATTAGGTCATCCATCTCCTCTCATGCTAGAATCCATCTCCATAAAGCAATACCTTTTGTCAACAGCACAGTGCAAGCACTGACCACTGCATCATATTTTACCAGCCCTATTCATTGTCCTATTCATTGTGTTTTGTtgactccctccctctctctcactctcgctctcgctctctctctctcgctgctCCCTGCAGGGATCTATGATGGTGACCTGCATAACAAACAGAAGTGTCAGTGGGCAGGCCTCATTGCATACTGGACTGAGGTTGTGACAGGCCCTTACCAGGCAGAATTTCATGCACCAGTGGACACCATTTTCCATCCTACAGTAGAAATTGATACACAGATGCCTATGGTTCCCTCTTATCTTCAGGCACTTCTCCTATGATCCTGAGAGTCTCCATAATGATAATGTCTCCCTTCTAAAATGCAGCTGCCGGGTTGCCTGGAAACCCCTAATCAGTAGACTCCTGGCCAAGAAGACACTGCTGCCATATAAACCCAGAAAGAGTCACTTCTAGTCAActctgcaagaactccagctcTTGAATTTGTCCCATGACAAATGCCAGCTCTTCTAATCTGCATTAAATTGCAGTAAAGGCACTCACTATTTCTCTTCCATGGGACTGATCTGCCAATTCATCCACCCGCTTCACTTGCTGATGCTGCAAGGCAAAGgagctatttttttctttccagcaGGCTCTGCTGGTGTATCAGCTTCTTGCTGTGATCACACAGCGcagcaaaatattaattaagctATCCTTATGTACAGTAATCCACGATTCTCTTTCGGAAAAATGATTGATTTCAGTTTCTCAGTTGAATATGCATATCATGTAgtgtttacatataaaatgcGACTATCTTCAAGATTGTTAGACTCTTCTGAGAAGAACAAGCCTATTTACATGGTGTTTGGATCACTATTGGCTGTGTCTAACCAAACACATCCAACCATATCTGAGTTACTCTGGACAATCTAAAATATCCCTTCACTGTCACTCTCACACtcctgttttatttactttctcatGCTCtgtctcctgattggctgcagcTCCTGCCAGTTACCATATAGCAGGACTTCTTTCATGCCTGAACTTGGGGCATGATAACTTTGGACATATCTGAACTGCCATATAACATCCCTGCCATGACCTGACATCCCTGACACAGCAGTGACTGTGAATTACTACCACAGGAATGTCAGGTGACTCACAGCAACTCGGGAACAATGTATTTTACTTCATAACATCAACTCAATAATCAACcattttgctctttctttctttcaagaaAAATCCTGTAGGCATTTCCCATTCTCCTGAAGGGTCCCTATAGTGCTAGAGTTGacattattttcaaaaaataaaaacaattaattaatatcgTCCAGCCAACAGTAATTCAACCACTTCCAGTCTTATTAAGAAAGGAGGAGAAACaatttctctcttgctctctcgcCATTTATAAGTGACTTCCATCTGTTTTCACTTTAGCAATAAAACTTGTTTTatgtgcttgtgtatgtgtgtgtgtatgcgtgtgcgtGAGAGAGTGAAGCCTCCTGTGCCAGTTCAAATCTATCCAAGCCATTCTTGTTTATTTTCCATGAGTTTGAGCACTGCTGTTAATGTGGCCAAACAGATTCCATAGAATTTTCTGAGATGGGAAATGTTAGGATGCTAATCTGAACCATAGGAAATTCACTAAATCATGTCATGCTAAATTATGTCTCTGAaatggtaaaaaataaataaataaatgaatgactcCTTCATTTTCTCAGTTTCCCACTTATCATTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403825.2 True 1861 lncRNA 0.41 3 22990447 22995189

Neighbor

gene id symbol gene type direction distance location
pik3r3b pik3r3,pik3r3b,LOC107717145,LOC107692397,LOC107594617,LOC107675943,LOC106584012 coding downstream 25592 22773126 ~ 22964855 (-)
LOC113538473 NA coding downstream 438148 22547254 ~ 22552299 (-)
adcyap1r1b adcyap1r1b,LOC108271541,LOC108441855,LOC107731652,LOC107717143,LOC107692394 coding downstream 476389 22484092 ~ 22514058 (-)
LOC117599264 zc3h3 coding downstream 597654 22390253 ~ 22392793 (-)
zc3h3 zc3h3 coding downstream 599892 22327455 ~ 22390555 (-)
pomgnt1 pomgnt1 coding upstream 53397 23048586 ~ 23062081 (-)
prpf38a prpf38a,LOC107731643,LOC107684051 coding upstream 68338 23063527 ~ 23071529 (-)
mpl mpl coding upstream 91418 23086607 ~ 23095386 (-)
tie1 tie1,LOC107731644,LOC107684058 coding upstream 103764 23098953 ~ 23116279 (-)
LOC113538427 tmem125,LOC108440199 coding upstream 173189 23168378 ~ 23178559 (-)
G32157 NA non-coding downstream 204757 22711213 ~ 22785690 (-)
G31934 NA non-coding downstream 421611 22565292 ~ 22568836 (-)
G31916 NA non-coding downstream 429839 22538323 ~ 22560608 (-)
G31755 NA non-coding downstream 674441 22315806 ~ 22316006 (-)
G31742 NA non-coding downstream 763787 22224385 ~ 22226660 (-)
G32244 NA non-coding upstream 47342 23042531 ~ 23042762 (-)
G32629 NA non-coding upstream 683593 23678782 ~ 23683686 (-)
G32686 NA non-coding upstream 1024936 24020125 ~ 24020779 (-)
G32777 NA non-coding upstream 1223304 24218493 ~ 24218937 (-)
G32781 NA non-coding upstream 1264117 24259306 ~ 24259855 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other downstream 396586 22582303 ~ 22593861 (-)
ccdc17 ccdc17 other downstream 408504 22572432 ~ 22581943 (-)
raver2 raver2 other downstream 1459019 21449546 ~ 21531428 (-)
lepr lepr other downstream 1672624 21281364 ~ 21317823 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 2561122 20359722 ~ 20429325 (-)
dmrt2b LOC108271504 other upstream 227104 23222293 ~ 23225548 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 620265 23615454 ~ 23632013 (-)
nbeal1 nbeal1 other upstream 2684901 25680090 ~ 25738817 (-)
LOC113538393 NA other upstream 2905541 25900730 ~ 25907994 (-)
slc19a1 slc19a1 other upstream 3085960 26081149 ~ 26105675 (-)

Expression


Co-expression Network