LOC117595835


Basic Information

Item Value
gene id LOC117595835
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5889282 ~ 5890832 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577038.1
TGATCTAGCTGGTGGagtgtgcaacacacacacacgcacgcacacacacacacacacacgcacgcacacgccgCGGAGCGTGAACTTGAATTGCGTGAAAGCCGCGAGCTAGTGGCGGCCCCTCTTCTGTTGGTTTtatgttagttttttttaaagtgcgcTGGAAAAGTGCGgcataaataaacacaagccCGGAGGTCTGCTAAAATTCCGCCTGCTTCCCAAGTCTTCCTCCGCATCCTGACACATTGGGGTCTACAACAGGAATCTGTCGCCAGCTTTGGAGGACAGTTTACCTGTAGCTCTGACCATAGTTACAAGCTGTTGTGACTATCTGGCTCAAAGTCTCCTATTCCAGACCAAGGTTACCTCTGAAAGGAAAGTGAAAACTTGTCCATGCTCATCTCTACAGCAGCGCGTGTCTCTGTGTGCATCAGCAGATGTCTGTTTGCTCCTGATAGCATGACTCTGACTAAGCTGTGAGGCTTCGAGAAGCAGAAACGACGCCCGATTCCAAGAACTGGCTTTTAcaggacaaagaaaaaagaggcaGAGCACGTCGAATGCTTCTCACAGTCCAGACCCTCACTCTCCTCATTCCTATCTCCTGTCGTGCCTTGCTTTATCTGCTCTCTCTTTCCaaccctctcttttttttctttcacacatatacactttaCCTCCATAGTCATTTCTATACTTTGTCATTAAACGTAAAAGTTTGAAATCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577038.1 True 732 lncRNA 0.47 2 5889282 5890832

Neighbor

gene id symbol gene type direction distance location
chd6 chd6,LOC107666014 coding downstream 25849 5761737 ~ 5863433 (-)
pigu pigu,LOC107554168,LOC107596774,LOC107666169,LOC107708084 coding downstream 209323 5659803 ~ 5679959 (-)
osgn1 LOC108272601 coding downstream 237997 5638596 ~ 5651285 (-)
mtss1 mtss1,LOC108273055,LOC108433704,LOC107708130,LOC107685817,LOC107554179 coding downstream 258025 5594109 ~ 5631257 (-)
LOC113532874 cyc1,LOC108433700,LOC108272604,LOC107666085,LOC103023575,LOC107729751,LOC107554183,LOC108414617 coding downstream 368929 5508012 ~ 5520353 (-)
psmf1 psmf1,LOC107580402 coding upstream 91752 5982584 ~ 5989372 (-)
rims4 rims4,LOC107666126,LOC107708122,LOC107696477 coding upstream 164990 6055822 ~ 6118568 (-)
LOC117599288 NA coding upstream 260569 6151401 ~ 6160674 (-)
tomm34 tomm34,LOC100305086 coding upstream 290196 6181028 ~ 6195188 (-)
eif6 eif6,LOC107723919 coding upstream 414340 6305172 ~ 6313411 (-)
G22237 NA non-coding downstream 18581 5870500 ~ 5870701 (-)
G22231 NA non-coding downstream 25181 5863865 ~ 5864101 (-)
G22229 NA non-coding downstream 94135 5794942 ~ 5795147 (-)
G22199 NA non-coding downstream 153586 5730446 ~ 5735696 (-)
G22219 NA non-coding downstream 173232 5715840 ~ 5716050 (-)
G22345 NA non-coding upstream 99138 5989970 ~ 5990195 (-)
G22367 NA non-coding upstream 152284 6043116 ~ 6043752 (-)
G22470 NA non-coding upstream 258114 6148946 ~ 6149167 (-)
G22478 NA non-coding upstream 338928 6229760 ~ 6229969 (-)
G22539 NA non-coding upstream 392283 6283115 ~ 6283948 (-)
romo1 romo1,LOC102788570 other downstream 353222 5532037 ~ 5536060 (-)
LOC113533127 NA other downstream 475196 5405967 ~ 5414086 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other downstream 688070 5111462 ~ 5201212 (-)
obsl1a obsl1 other downstream 987271 4813275 ~ 4902011 (-)
trnaf-gaa_14 NA other downstream 1557111 4332099 ~ 4332171 (-)
blcap blcap,bc10 other upstream 65807 5956639 ~ 5965183 (-)
LOC117596222 NA other upstream 183203 6074035 ~ 6076877 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other upstream 314452 6205284 ~ 6208666 (-)
G22591 NA other upstream 588570 6479402 ~ 6480011 (-)
mitfa mitf,LOC108424034 other upstream 2369653 8260485 ~ 8265229 (-)

Expression


Co-expression Network