LOC117596067


Basic Information

Item Value
gene id LOC117596067
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14238795 ~ 14251264 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577242.1
ttcctgttgaacctGTGTAATGGAGAACAGTGTGAGGGAGAGGACTGCAGGCTCCGggtgtattctcacctcatgcccagttttCCTGGAATTGGCTCTGGATCCTCCACAACCTTGACCAGGAGCAGTTACTGAATGTCAGTGACTGACTAGCTGCAGcttttattgaagaaaaaaaaaaaaaagGTGAAGCTAATATGACACCGTGCTGAGAGAGGAAAGGAACGACAGATGACGGAGAggcaggaaggagagagagagatgcatggGCGTGAAAAAGAAGCTGGGTCTAGGCCAGGGGAACCCACATCACCTCAGTAGTGCTGTAATGTCTTATATAGTGACTGTCTTGTgattattattgtacatttatGGAGTGTTCATTGATAAACAGCATTGTGGCAGAAAgcacagttctattagaaacCTGAAGCTCACATTTCTACATACATGgaagtattttgtttttcatctgtttgtctttcgctttaataaaaatctgttcataagaatttagatataaatataaaaacccTGTTACAAGTTAAAAGAACATCTGAGTTTACAGAATTAAGAGTCAGCAAAGGTGCAGAAACAAAGGTGTCATTTTTGTTTGCCTATTCACAGAACAAATCATAATAGAAATACACCTGCATGAAAAACCTCAGGTCTAAAAATTGGTGGACGTTTCATCACTTGCCCTATGCTGATGATACCACTGGATAACGGTAAAGATGATATGAAATGTGTGTTCAGTAAAGGCAGAGAACATAAGTTTCCAGGCAGAAGGCACTTTAACATAAAAAGGAAGATCCTGGTAACTGTTAATATGAATAATTTCTCTCCTGATGGATGTGAGATAGAAATAGTAGACAATTTCAGCCTTCTTAGATCAATAATCAACAAGGAAATGACAATCTTTCAAGAAACTGGATGACAAATTGCTCTTGGCGAGCAGCAGTGAAGGACTTTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577242.1 True 975 lncRNA 0.39 3 14238795 14251264

Neighbor

gene id symbol gene type direction distance location
txnrd3 txnrd3,LOC105934676 coding downstream 66739 14158384 ~ 14172056 (-)
LOC113531636 chst13,LOC106565240,LOC104944027 coding downstream 90946 14129841 ~ 14147849 (-)
cfap100 cfap100 coding downstream 194470 14030764 ~ 14044325 (-)
LOC113533843 NA coding downstream 496235 13738543 ~ 13742560 (-)
acvr1bb acvr1bb,LOC108271957,LOC108427611,LOC107690814,LOC105017213,LOC107686786,LOC106583225 coding downstream 511721 13707454 ~ 13727074 (-)
plxna1b plxna1 coding upstream 26785 14278049 ~ 14457232 (-)
trnae-cuc_5 NA coding upstream 141016 14392280 ~ 14392351 (-)
chchd6b chchd6 coding upstream 244956 14496220 ~ 14541322 (-)
tpra1 tpra1,LOC107666698 coding upstream 293925 14545189 ~ 14554473 (-)
trim107 LOC108271930 coding upstream 306298 14557562 ~ 14560676 (-)
G27169 NA non-coding downstream 65874 14172672 ~ 14172921 (-)
G27168 NA non-coding downstream 80696 14156938 ~ 14158099 (-)
LOC117599875 NA non-coding downstream 139106 14063956 ~ 14099689 (-)
G27105 zxdc non-coding downstream 209911 14027302 ~ 14028884 (-)
G27043 NA non-coding downstream 402313 13835830 ~ 13836482 (-)
G27254 NA non-coding upstream 103577 14354841 ~ 14401429 (-)
G27259 NA non-coding upstream 193362 14444626 ~ 14454291 (-)
G27303 NA non-coding upstream 241373 14492637 ~ 14492839 (-)
G27448 NA non-coding upstream 539167 14790431 ~ 14790641 (-)
G27484 NA non-coding upstream 608741 14860005 ~ 14860246 (-)
G27107 LOC108272123 other downstream 180350 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 331606 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 591618 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 604051 13632262 ~ 13634744 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other downstream 736625 13493512 ~ 13502170 (-)
pxmp4 pxmp4,LOC103464829 other upstream 621684 14872948 ~ 14875990 (-)
G27843 NA other upstream 1046045 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 1205371 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 1210686 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 1874566 16125830 ~ 16135715 (-)

Expression


Co-expression Network