LOC117599085


Basic Information

Item Value
gene id LOC117599085
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11257764 ~ 11262304 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579523.1
AGCAGCACCAGAGGGCTGAGATCATTTGGAAGTGAATCAGACCAACACTACTACGCACACAGTGTTCTAACAATATCAGGTATCTGCATGATAttctgcattgtgctgctgccgcatgattggctgactggataattgcacgAATGTGCAGGTGAACAGatgctcctaataaagtggacaGGTTGTGATGGATCAGAAGCCTCTCCCAGCAACACTGGGCGGAATGTGGGaaaattcaccctggatggtaCATCttagggcaccatgcacacacgtTCACATACTTAATCACACTTAAGGGCAATTTAACATAGCTAATCCATCTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579523.1 True 327 lncRNA 0.46 3 11257764 11262304

Neighbor

gene id symbol gene type direction distance location
tox2 tox2,LOC107681298,LOC107666148,LOC106565275 coding downstream 88714 11069885 ~ 11169050 (-)
cbfa2t2 cbfa2t2,LOC107681292,LOC107740270,LOC107666150 coding downstream 245952 10986308 ~ 11011812 (-)
snrpb snrpb,LOC108272150 coding downstream 347280 10906195 ~ 10910484 (-)
ddx27 ddx27,LOC107553908,LOC107587605,LOC107681294 coding downstream 353819 10888412 ~ 10903945 (-)
znfx1 znfx1 coding downstream 372741 10874924 ~ 10885023 (-)
soat2 LOC108272126,LOC108431801,LOC107734612,LOC107681296 coding upstream 166502 11428806 ~ 11441393 (-)
mbd6 mbd6 coding upstream 238284 11500588 ~ 11514630 (-)
mars1 mars coding upstream 259817 11522121 ~ 11536038 (-)
LOC113531982 LOC108272195 coding upstream 324600 11586904 ~ 11612295 (-)
gli1 gli1 coding upstream 356667 11618971 ~ 11660989 (-)
G25185 NA non-coding downstream 235123 11022439 ~ 11022641 (-)
G25184 NA non-coding downstream 236039 11021523 ~ 11021725 (-)
LOC113534445 NA non-coding downstream 273757 10966696 ~ 10984007 (-)
G24623 NA non-coding downstream 1086589 10170970 ~ 10171175 (-)
G24620 NA non-coding downstream 1089295 10168211 ~ 10168469 (-)
G25320 NA non-coding upstream 64522 11326826 ~ 11329556 (-)
G25476 NA non-coding upstream 195670 11457974 ~ 11458190 (-)
G25484 NA non-coding upstream 236941 11499245 ~ 11500508 (-)
G25478 ddit3 non-coding upstream 255184 11517488 ~ 11534525 (-)
G25553 NA non-coding upstream 434775 11697079 ~ 11698078 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 323600 10916042 ~ 10934164 (-)
G24760 NA other downstream 767469 10489293 ~ 10490295 (-)
G24516 NA other downstream 1389486 9863367 ~ 9868278 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other downstream 1531713 9715516 ~ 9726051 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other downstream 1815919 9435506 ~ 9441845 (-)
kif5ab kif5a other upstream 180167 11442471 ~ 11485469 (-)
LOC113526127 LOC108272031,LOC108431803 other upstream 424441 11686745 ~ 11764135 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 2231208 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 2369958 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 2378077 13640381 ~ 13647177 (-)

Expression


Co-expression Network