LOC117599540


Basic Information

Item Value
gene id LOC117599540
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 8511307 ~ 8516859 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579952.1
ttttttttttttgtatattttaagcTAATTTCCTAGCTAACTCTTGTGATGTCTGGGCTGATGAGGTGAAACCAGAGAGGCTGGataaaacccacacagactcggagagaacatgcacagaaaaaacacacagacgAAACCAGAGCATGGATGATCCAGATTGCAACTTGCAAGATCCTGTGTGTACAAAACATACAATTTGCCCACATCTAAAGCTGAGACAACATTTCCACTGGAACTTTTTGAAGAACTATCCTAAATTAGAGCTACACAGTTAATGTATTTCTGGTGCCCATGATGTATAGTACAATAAGAAAGCATCCTGCGGAATGGctaaaaacactgagtgaccCAGAactaataacatttataaaattgtaCTTACTAATTTTCTATGGTATCCAAGAGGTGCCCTGAGgatacagtatattgtacaGTTTGATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579952.1 True 446 lncRNA 0.37 3 8511307 8516859

Neighbor

gene id symbol gene type direction distance location
gpr27 gpr27 coding downstream 517684 7991214 ~ 7993623 (-)
gxylt2 gxylt2,LOC107666964,LOC106565732 coding downstream 689249 7788563 ~ 7822058 (-)
ppp4r2b ppp4r2,LOC102785172,LOC107667031 coding downstream 724858 7778190 ~ 7786449 (-)
chl1b chl1,LOC100380675 coding downstream 1140788 7282007 ~ 7370519 (-)
LOC113529215 LOC108271629,LOC108435695 coding downstream 1318166 7066318 ~ 7193141 (-)
gnat1 LOC108271583,LOC108424115,LOC102793896,LOC108231337 coding upstream 52488 8569347 ~ 8574762 (-)
inka1b LOC108271512,LOC108415076,LOC107723929,LOC107587643,LOC107708110,LOC107595459,LOC107666006 coding upstream 333123 8849982 ~ 8853110 (-)
gnai2b LOC108271854,LOC107587570,LOC103137272,LOC107723915,LOC103360398 coding upstream 343513 8860372 ~ 8915086 (-)
slc38a3b slc38a3,slc38a3b,LOC108271853,LOC108411719,LOC107666102,LOC107723914 coding upstream 405265 8922124 ~ 8953564 (-)
rbm5 rbm5,LOC108271979,LOC108433690,LOC107696464 coding upstream 456310 8973169 ~ 8982021 (-)
G23643 NA non-coding downstream 21661 8489164 ~ 8489646 (-)
G23641 NA non-coding downstream 22549 8488514 ~ 8488758 (-)
G23621 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 non-coding downstream 75522 8432140 ~ 8435785 (-)
G23619 NA non-coding downstream 80613 8430480 ~ 8430694 (-)
G23617 NA non-coding downstream 81214 8429781 ~ 8430093 (-)
G23758 NA non-coding upstream 175080 8691939 ~ 8692150 (-)
G23952 NA non-coding upstream 392360 8909219 ~ 8990207 (-)
G23973 NA non-coding upstream 487430 9004289 ~ 9004512 (-)
G23977 NA non-coding upstream 503210 9020069 ~ 9021558 (-)
G23991 NA non-coding upstream 553547 9070406 ~ 9070769 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other downstream 27126 8479374 ~ 8484181 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other downstream 159613 8343624 ~ 8351694 (-)
mitfa mitf,LOC108424034 other downstream 246078 8260485 ~ 8265229 (-)
G22591 NA other downstream 2031296 6479402 ~ 6480011 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other downstream 2302641 6205284 ~ 6208666 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other upstream 918647 9435506 ~ 9441845 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other upstream 1198657 9715516 ~ 9726051 (-)
G24516 NA other upstream 1346508 9863367 ~ 9868278 (-)
G24760 NA other upstream 1972434 10489293 ~ 10490295 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other upstream 2399183 10916042 ~ 10934164 (-)

Expression


Co-expression Network