LOC117599875


Basic Information

Item Value
gene id LOC117599875
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14063956 ~ 14099689 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580178.1
TTGtgagaggtgtaaatgaaatatggaaaaataaatcaagggaatggtaaattaaaattatatagtatcaattatataaggaatagtgaatgaagaaaagctgaaatgtaaATGAGGGGGTTGTTTACGGTGACAGTGTGCGTTACTAGGCAACAACGTTCTCTTCCGGTACCTGCACCtgcatactcttttgctacacactcacaaGCATTTCTTGGAGGAGAGTGTTTTACCAACTTGGGGCTGTTCAGTGCTGGAACATGTTGCTTCTTCAGACTTAGCAAGAACGATTTTTCGTCTTTCTACACCATCGGGGCATCTCCATAAGAataTCTCAATCACTCCCTCTAATCTTCTGAAAGAAGAGGAATACGCCTGGCTCATGTTCTGCTGGTTTGAAGGGGAGGATTTTCTTTGCTGGTGTTTGTGAAGGAAGGGGAGAAGAAAATCTTGTTTGGTGAGATGTTGCATGAATAGGCAAAGTGGAGATTGGAAGGTACAGCTTCTTTATcagtacctagaataatgaagactaTAGCAGGCAACTGAGGTTGTTCCTATAAAGCTTCCCAGCTCCTCAGATAAAGATGCATGACTGAGGATTCATAGACATGGAACTGTCAACATGGGATGTTGGTGTTGTCGCCCACGTTCTCTCACACGATCACTCAATTTTTAGTCTGACAATTGAGTGACAGGATGCTTTCTGTCAGCTATTGACCTGCTACAGTTCCTGCCTGCACTGTGATCACTTTATACAccattttaaaggtacactccCACTGATGGTGGTGAAAGGACCTTCTCCTTTAGTGTTTCCTCTCACCCTCCTGATACTCTCCTTCTGCTTCTGTTCCTCCTGCTTCTCCATCTTGGAGCCATTTACACATGATTTGCTTTAACATGTTCATATTAAGATTCCTATTCACAatgtgctctttttttcctttgttgcTTTAATCTGGTTTCTGTAGGGTTTCTGTATAACTGCTTTGTGGCAATATTAAACctcctacacaaaatgtaaCTGAAGCTAAATTGAATTAAACAGTCTTGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580178.1 True 1059 lncRNA 0.41 6 14063956 14099689

Neighbor

gene id symbol gene type direction distance location
cfap100 cfap100 coding downstream 19631 14030764 ~ 14044325 (-)
LOC113533843 NA coding downstream 321396 13738543 ~ 13742560 (-)
acvr1bb acvr1bb,LOC108271957,LOC108427611,LOC107690814,LOC105017213,LOC107686786,LOC106583225 coding downstream 336882 13707454 ~ 13727074 (-)
rplp2 NA coding downstream 434410 13626968 ~ 13629546 (-)
ngfb ngf,ngfb,LOC103031633 coding downstream 519822 13532981 ~ 13544134 (-)
LOC113531636 chst13,LOC106565240,LOC104944027 coding upstream 30152 14129841 ~ 14147849 (-)
txnrd3 txnrd3,LOC105934676 coding upstream 58695 14158384 ~ 14172056 (-)
plxna1b plxna1 coding upstream 178360 14278049 ~ 14457232 (-)
trnae-cuc_5 NA coding upstream 292591 14392280 ~ 14392351 (-)
chchd6b chchd6 coding upstream 396531 14496220 ~ 14541322 (-)
G27105 zxdc non-coding downstream 35072 14027302 ~ 14028884 (-)
G27043 NA non-coding downstream 227474 13835830 ~ 13836482 (-)
G27016 NA non-coding downstream 272590 13788793 ~ 13791366 (-)
G26970 NA non-coding downstream 369136 13647447 ~ 13694820 (-)
G26985 LOC108271615 non-coding downstream 378174 13684123 ~ 13685782 (-)
G27168 NA non-coding upstream 57249 14156938 ~ 14158099 (-)
G27169 NA non-coding upstream 72983 14172672 ~ 14172921 (-)
LOC117596067 NA non-coding upstream 139106 14238795 ~ 14251264 (-)
G27254 NA non-coding upstream 255152 14354841 ~ 14401429 (-)
G27259 NA non-coding upstream 344937 14444626 ~ 14454291 (-)
G27107 LOC108272123 other downstream 5511 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 156767 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 416779 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 429212 13632262 ~ 13634744 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other downstream 561786 13493512 ~ 13502170 (-)
pxmp4 pxmp4,LOC103464829 other upstream 773259 14872948 ~ 14875990 (-)
G27843 NA other upstream 1197620 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 1356946 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 1362261 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 2026141 16125830 ~ 16135715 (-)

Expression


Co-expression Network