G218574


Basic Information

Item Value
gene id G218574
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 2301201 ~ 2306753 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU258955
GCGATAAGCGTGCATTGACTGGTAGTGTGAATGCAGTCAAAGGAAAATTCCACCTTGAACAACGTGTATATTAATCTccataattaacatgtgatcttttttttttcttaacatgTTGGTCTAGTTTCACTTTGATTAACAggttcctacattacccacaatgccgttctacctgctgatagtggtgcagtgggatttcaTCCTCTAGatagagagcgatgcagcggcgctttagacCTTTAACCTTTCCGGCTCTCTCACTTTTTCATCTGTACGTTCTGCTCAAACgcatcagcttccaaagcttcaactttcatcaCGCTAGTCATCActtagatcgctaactagccaagccgaGGCTCTGGCGTGACTCGGCGTCGTgaagctgcactgcattctgggacgGTCAGTCTGCTGTTTGCACAAACGTCTCTTGTTCATTCGTTTAAACCTGATCATCATCCCCTTATGTATGAGATCTTTGAATCTTTAGCTCtttttaaatgccattgtaaccGCGATAGCAATAACATCATCCCCCTGTGACGGCAGCACGgcacacaactgctaacttctgttctatatatatgaaatatacagAAGAAAGGAAATACAGCACCAAGCAAAAATTGCACAAttgcaaatatttcaatataaacaaatgtaacatttttcgGGGTGGAGGTTTCCTTCAATCCTGGTCACTGGGCCTCCGACAATCTACTGAACAATTCCTTTTGTATGTCTCTCTTTAAAATCTAAAACCACAACCACAAATTTTCAGATGcttggcatatatatatattatgtgtgtgaaacCAGTGTTTAATAACAAAAGTTTGTTTATGAGTGCAAAGACTAGCTAgctgttattttgcttttttacgTAGCCGAGTTGAAGGCGGATCTTCGACGTAAACAAACTTTAGAGTGTTCCATATTTCCCCAAGTGAAGAGTTTTGGTGTAGAATTACCATCCTCacttaaactatttaaaaaataagttgttttttttttgactgaggCTAACAGGTGACCGAAAACTCTATGATAGAAGCGAAAAACAGCATCGACCCTGTTTACTACACCGCTCCATTTGTTATGGCTTATTGCTTTACGGGAGCTAGCTGAAGTATCAACTTCACATTGCTGTAGACTTCAGGATCACAActtacccagaaggcattgctGCAACCTGCTGATTTCCTTTTCCAAGTGTGGAACTTCCTTACTCATTGAGGTAGCGGGGTGATGTGCGTTTGTAAACTGTTCTTGCTCAAGCcgtttgtgtgtaaataaatctataatatcAGGTTTTATATTCGCCATCTACACGCCAacatgctagctagttagcaacaGGGACTCGGTACGCAGTGCGAGGGAAATGATTTAAGCAACGTTTTTCTCGATGTGGATAGCGTGCTCCGGATGATGCTGTTTAAGTGCAAGCGGTCGCAACTAAATCCCCCGAACCTGATGTTACAGTTCtgatgttagcatgctagctgtGTGAGAGAAACTGATAGCCCACAGCGTGTTCCTGCAGAAACATGTTCCTCACCATCAACTCTGTCTAGTGTAGGAGAAGAGAGATATTGTGAGGGAACTGCAACATGACGCCATTGGTCAAAGAAGTTGTTGCGTTCCCTTCTTACGTATCCCTGTACCAGCGTTGGTGGAATGATTACCGCGGCCAAATCCGAGTTGCTCTCCGGCGTGAGCGAGTGTGTGGTTACCTTTCCATCACCGCGTTCCCTACGGCAGCGCAAAAATATCCGACATCGGTAATCAGTCGTCCGTGTTTCCCAGAATCCATGGCTTACGAAAATCCTTTCGGGAGACCTTTTTATGGTTTGTCGTAGAAAACGTTTCCAACTGAACGCTTGCAGGGAAAAACAAGGTAAAGAGTACGTTCTTCATCTTTACCCAGCACGCAGAACGTTTTTACTCGCATGTCATCTGACAGCCTACACACTCTAGCATGACTTTACTCCCATTTCCTCATTCCCTTTTCCACTGAGGCTGGTTCTAGTTAAGAGAATTCGAGAAGAAGAGACATTTGAGCCATCGTGCATCAGCAACGTTTCAATAACACCACATGCCtaagttattttatttctcttaaaccacagcaaaatGCAAATTACGGTCacacctccttttttttttttccttttcgaCCACCACCACATTGTagattttatcagtttataatcACATTGCATGTTTGCGGAATGTCTcgttaaacaagttagttcctgttacaaCTTAGGTTATAGCTCTttctcttgaagctaataaaaacgcagcttgttagtGAGGAAGCACAAAACACAACGTCGTCCGTCCTTTAAGACTTTCTTGTGGTGGAAATCTTAGtggctttaaaaaagaaaatccctCAAACTGTCACGGCTGCTGTTCaagaaaattcattttaaacatgataCAAATATTACAAGAACTCATCACTTGTACAAGTAAAGCATCTGATGCTAGAACACTGAAGATGGGTTGTGCGCAGCCTCATCAGTTCGACCTAAAAGCTGTGCTTTGTTAATGACTTGACGTGCTTTAACCAGAAAGGTGCTAAAATATCTATATCTAGTTTAGCTAAAGTAGCAGAATTGCTGGAACAGGAATCCAAAAATGGACACCAAAGATGTTTGAACGTTGAACTTACCTGCAAATTGTACAACGGATAGTTTTGGTCTTTATTCTGTTCTGGGAAATTCTTTCCTCGATGCTGCCTTCATGGCAAAACCGAGACCTTAGAAAACTGCCAATAAATGCATTGAGAACGTGAGCAGGCCAGGAGCTGGATTCCACACATGCCAGGTATTTAATCAGTTTACATCCTTCAGGGTTAGTGCTTGGAGAGAGGAGATGGATCACTTGTCCCGTACCTCAAAACTCAAAACCCTCAAACAAAAATCCAGGGGAGAAAAATAACACGCAATAAACCTGCGCGTTATTATAAACTAGCGTATGCCTTAAAACATAAAAGCAGCACAATGATAAATCAGATTCTTCAATTTtatgaattaatatataaaaacagtcTCACTAACGCTGTCTAAGCTCTCGGATACAAACGTCAGATTCCGCTTGTATGGTGACGTCAGAATTACTGAGTcacagagaagagaaaacatttgttaaaaacTTCAGTAGCCAATATTATTCATTTCTTACTAGAATAGATCATGTGGAAAATTATGTACAAATGATGATAGTttcaaaaaaacagtttggaaaCCCGGATTTCCAGTCAGGAATGTATCTGGATTGGCGTCCTGCCAGTCATTTTATGGACACGCCCCCAACGCCCCTTCATATTATGAGGAGAAGTTACATGTTTATAGATTTGTAACTCGGCTTTCGAGCAGCTGAATAACCAAGGTgagcttgaaagtgatgtcatgactgTCCTTGTTCATTGTAACTCAAGTAAGCATGCTAACTCTAGATGAACTGCTAAAagttttgggggcggagctgTATGTACACGGGTGGAAATGGGGCAGGCTCAatgagttaaaaataaataaataaataaataaatcaaatcttaTTCTACTCTATCTATTTAACCATTAgagacattttttccccacagaaaTCTTACCTAACCCACCTTTAATATTAGCTAAttactagttagctagttactACCATCACTACTGCTAACAACCAAAATTTGCTAGTTGCTACTGTTGCTGTAGTTTGTACTTGTGCATATTTTGGTATCATTAAGGTTAATTATAGCATTGCTGAAAACTTTAACACTTTGCTAATTAGAAATTTAATACATTAACCAAAGCATATTTCAGCATAtttaagaaatgtaaatgttacatGCAAAAAATTCGAAAGTGCGCTAAATTATTAAGAAGTCTTTATGACAGGGAATGTGTGACAGATGTGTAAAGTTAAATCGTTTCAATCCACTCTGGAAGCGACTGCTGACTTGTCTGTCATGTTTGCTGAAATCACACATTTGGGGCTTTGAGAAAATTCAAAGAGAGAGTTTCCAACAAATGAGGACAGATTTGAAGACAGAAATTCTGGCGTAGTTAAAtagtttatcattttatatcaaAAATGATATTGACTGATGTGCTTGTATTGAAACaggccactttttttttttttttttgcaggaaaaGGAACCACCTAATAAATAGGCTGGTCATGGCTTCTGGTCCTTTGCACCCAGCATTAAAGACAGCTACATACCCTGCTTAATGCACCACAGGTTACAACTGCACAGACgttttccttcattctttctgataaaaataaaaacccaccTGCTTGAAAGTTCCAGTGATTTCCTCTGAAAATGGTGGCGTGTTCTTGAAGTCACCGTTTGTCTTCAAGTGATGCACTGTGCCGTGATgtgattatttcattacagaatGTCACGTGGGAAAGTCGTTCCCAATCGTCACACTGCTCGTGGAGGCAGTTCTTTAGCTCAGAGCTGGAAAGCTGAAAGTTGAAATGCGAGTCCTCAGGCAAGACCCTGAAACTCCATGCCGAGATCGGATTCTGCTTTAACAGCTCTAAGCTTGGAGCGGATTGTCCTTTAACAACCCTATCTTGGATCTGTATTCTGCTTCAACAACTCTATGCATGGATTAGATCCTATCAAGGTGCtttccatataaataaataaatatttacttttaactTCCCTGTTTGCCTTTGACTTACTTTATGACCATATAACAGCAGGACTTTCCTCAAAGAGGTAACTCTGAAGGAACTCAGATTGAAGAtgctgttcacaggacaaccatagTCCAGACACTCCACACAGCTGGGCTATAAGGAAGCGTGGCGAGCCACGTGAATCCCGTGTGGCGTGTCGGAGTCTCAGCAAACATGTCGAAAAGTTTCTCTGGTCGGAGGAGACCAATGTTTTACATTTAGGCCTTAACACAAAGCGTTACCTTAAGCAACACTGCTTAGCACCCTGAGAGCACCAActctacagtgaagcatggtggtggtagcctCTTGATTGCTTCTGTCTAAAGCCCTCCTTACCCGGTCACTGACTTTCGGTGGACGGCCTCCTCTAGTCAGAGTCGCCATTTTGTCAcgttctttacatttttaataacgGATTTAACTGTACTTTTGGTTTTATTACCAAATCCTGACTGATGCTTTTTCAGTTTTGACAGTTTCTCCGTCTTCATTATGCGGTTTGTTTAAGCATGTTCTCTAACAGGTGTATTTACagtgagatcatgtgacactatTTGCACACAGGTTGACTCAATTCAACCAATTATATAACTTCTACTTATGTACATTCATGGCATATGATCtaaatgaagtccatttcagctCAACACTGCAAAATGTGGAAACGGTTAAGGGAGATGAATACGTATGCAAGGCactgcacatatacacagactTACTAATCGTTTTATTGGGTTCACTGACCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258955 True 5470 lncRNA 0.40 2 2301201 2306753

Neighbor

gene id symbol gene type direction distance location
LOC113544600 NA coding upstream 16063 2281426 ~ 2285138 (+)
farsb farsb,syfb,LOC107585746,LOC107558835,LOC106581314 coding upstream 32156 2261212 ~ 2269045 (+)
usp16 usp16 coding upstream 41131 2249628 ~ 2260070 (+)
grik1b grik1b,LOC108277896,LOC107669874,LOC107670116,LOC108410432 coding upstream 56636 2225553 ~ 2244565 (+)
LOC113544552 LOC108277897 coding upstream 77498 2221227 ~ 2223703 (+)
slc36a4 LOC108277902 coding downstream 35437 2342190 ~ 2357191 (+)
kcnj13 kcnj13 coding downstream 340173 2646926 ~ 2666744 (+)
trnap-agg_13 NA coding downstream 375263 2682016 ~ 2682087 (+)
trnaw-cca_14 NA coding downstream 376878 2683631 ~ 2683702 (+)
otx5 crx,LOC108277615,LOC105909735 coding downstream 450857 2757610 ~ 2764095 (+)
G218534 NA non-coding upstream 101213 2199346 ~ 2199988 (+)
G218503 NA non-coding upstream 221077 1959246 ~ 2080124 (+)
LOC117599082 NA non-coding upstream 454320 1845761 ~ 1846881 (+)
G218450 NA non-coding upstream 471386 1798693 ~ 1829815 (+)
G218439 NA non-coding upstream 619083 1680220 ~ 1682118 (+)
G218573 NA non-coding downstream 414 2307167 ~ 2360138 (+)
G218576 NA non-coding downstream 4065 2310818 ~ 2312249 (+)
G219018 NA non-coding downstream 306427 2613180 ~ 2613470 (+)
G219019 NA non-coding downstream 308761 2615514 ~ 2615718 (+)
G219033 NA non-coding downstream 360954 2667707 ~ 2669804 (+)
tiam1b LOC108278361,LOC108411134,LOC107585744,LOC107705640,LOC107558809,LOC107670130 other upstream 104536 2147991 ~ 2196665 (+)
ctsc ctsc,LOC107735775 other upstream 168821 2126787 ~ 2132380 (+)
LOC113544529 nox4 other upstream 248606 2037731 ~ 2052595 (+)
G218476 NA other upstream 376917 1921771 ~ 1924284 (+)
gria4a gria4a,LOC108278238,LOC107756206,LOC107566895,LOC107689577,LOC107560842,LOC107725765,LOC102308165,LOC107670112 other upstream 393958 1843357 ~ 1907243 (+)
ccdc150 LOC108277901 other downstream 14237 2320990 ~ 2332581 (+)
LOC113544485 NA other downstream 624577 2931330 ~ 2939252 (+)
wu:fb16f03 eif4g1 other downstream 1981467 4288220 ~ 4317610 (+)
hspb12 LOC108277948 other downstream 2076519 4383272 ~ 4386991 (+)
zgc:153039 LOC108413394,LOC108278199 other downstream 2218593 4525346 ~ 4564503 (+)

Expression


Co-expression Network