G257608 (LOC108276210)


Basic Information

Item Value
gene id G257608
gene name LOC108276210
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19466692 ~ 19470918 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU304932
ACACATGATTAAGAATGTACACAGAACAGTTCTATTAAAACGTTGCTGATTATTTACATTACGTCCTTTAACAAATATGGAAAACTGAGACcttctaaaaaacaaacattaacaaCAGCAATTAGTGATGCTAAATGTAATTCACACAAAGCATGCCTTGATTCCATAGCGGATTTTCCTATAGTGcaaagaattatttaaaaaaaaaaaaaagttaagaatTTTGAtcaacaatgacaaaaaaaataataaaatagctgCCAGTAGTCAGAAGTAACACATTATGTGTACATGTGATGTAACTAATTTGCAGGGGAAGGGTTTATTGAAAAAGGCAGGCTGCTAAAATTGCCAggtttgaattgaattatttccAGAAAATGCACCATAGAAAGTGATTATTAAATTCGCCTCAGTGCCTGAATTCATGAGAGACCAAAAGCCCTGAAAGGCCTGAAAGAAACGTTTTAAACAGCCAAGAGTTACATTTCTCACCTGCAACCTTTTTGTGATAATGTACAAAATGGCCTTCATTGTTTTTAGATTAAGTAAGTTGCTGTTGGTACTGATGTACTAAGGTCTAGCTAAACCATGAGTAGATTAAATTATTGCTAGACTCGACTCTGTGCAGCTCTGCAGTGTTCGACACCTCCGAGTAAGAACACACACCGAGTGTTAGACGTGTAAAAAGGCACTCATTTGGATCTAGGAGGTGATTACTGcatcagagaaagacagatgttTAACCGATCATCAGTTATACGATATCACAATGCTCAAAAAACACATTACTGTGCAAACTTTAAAACTCACTACCCCTGTGTTCCATTCAGTTCAGGACTGAGAATTCTTCTTCTTAATATATTGCATATGGAACTTGCTAGCGTTTATAAGCAcatggatttttctttttttaaatgccaacCATGAGCCAGGTGTAGGTACACTTTTTGGAAAACCTACATTTTGATTTCCTAGACTATGAGAAAAGGTTAGAAAGTTATagcaatgtataaaatgtgtatCTGTAAGTGACCGATGCAGCGAGCGTTAATGATTTGTCTTGctggtgtaaaaataaattacattccAATCTGGATGTTGACAGATGACGCACGGttaggtttaatttaaaaactaaaatataagataacaaaaaaatttactgTACAGTCATAAAggtcatttcagtgtttttaaaaaaaaaagaaaagaaaaaaaaagccaatctAACTGCTTTGAGGCATATGATGACCTTAGCGACATGTGCAACACAGAAATGGTAAAAAACAGCACCGACTATTTGCTCTCGGAATCTACACTTCCTAAAAATGTTCAGTTCTAACTTTAGATTCACAGAAGAAACATAATATTCCCCCTCCTGTATCTCCTattaacatatataaataagataaaacattttaggaaatgAGGGGATTTAGAACAGAAGCAGTCTTGATGAAAACAGTACACAGCAAAATGTTTTGTCATTAAAAGACTCGTCATCATTTCCTTCATGAATTTCACCTGATCATATGACGTTTTGTAGAAACTCAGGCTAGTTTCCAAAGAGGTAATTGAGTGCCGTGTCAAATAATGATTTGGAAAAAATAGAGCAAACATTGAAACACTGAAAATCAGTTCTGACAAATAGGAAACTGGCCAGTGACCAAAAAGGCAAATCTACCGGCCAGTGAGGAAGCTCTGTTTTAAAAAGATTCACGTTTGTATAATTTGAGCTGTTGCTCTGTAACCAGACTGACTGACAATAATGAGGATCCAGTATTATGCAGGGGTGGAAAGATCATACACTTATTAGCTAGCCcggtgtgctgcccagtcctaTGTTCTGGTTGCCTGGAAACTGACTaggctattaaaaaaaacaaacaaacaaacaaacaaacaaaagtggTAGCTAAACTAAGGTAATAAAATTatgctagttaagtgcattgaTACATACTAATGATGGAACAATCGGATTATTTGGATCGATACACCAATTTAAAAGGCAATCACAAATTGAATACAAATCGATtcaaaaaaaggacagacaactggtgtataaaattaattcatatttataaactgatgtgtaaataatataattagcTAGCACTGATTTGCGCATAAGTCTGGCCTTCTCTACGACACCATCGCTCGTGAATTAACAGTAGGCCTACCCCAGGTTCTGCACAAAAGTTCTTCACATATCATTCAGATCGTAGCAGATTACTGATAGTCAAATATTGAATCAAAATACCGTATCGtttggaagcctgaggtttacatcGCTAATGTAGACGAAGGGAAACGAGAAAAGACAGCAAGTCACTGGCCTGCATTTGGGCATTAAGATTTGTTCGGTCCTTTGTTCTGTCTGTCaacacacataaaaataaagatatttacACCTAATATGATTAGGTGTGTGTGCAGCAATGTTCCTGATTCTCAAAAGATCGTCTGTCATCCATAAACGGCTTTCTACCGTCAGCCAGATCGCGTCTCGTGTGACGTGTGTAGTGCGGATGATGCGATTCGGAAGCATGCTGGTGCACCACTGTGAAGCACATTAAGCTTAAACAAAGCCTACATACcaaagaaagaggaggaggagtagagagtttttttctttttggttgtTGAATCTTGTTCAACTTATCGTGGGCTACttacaataaataaacctgCTTGTCCCAGGTGTCCGGGCTAGTGATTTCTCCACCCCTGATTACCCCTTTAATGATTTACCACATGAAAGTCATTTAATTAGTACACTCCAAGTTAAGCCATTGCTAGGAAATTAGTCAATTAAACATCTCAAGATCCAGCTTTGCACAGCCTTTGGGAACTCTTTGGGAACAgttgttattttattacttatttggATACAAATTTACTTTCCATGCCagacagaataaaacaaaatcagaaATCAATCCTGCTCTGTGATGAAAAGTAAATCACTAATATTGATTCTCCAGCTGGGATAAAACacaaatttcaaacaaataacCACAGAAATGAACAGgacctttttttccttctttagaGACATGATTGCTGttaggcacttttttttttttccttttgcaaaAACCAATTAACTGATCCACATGATGCACAGTTTGGTAGACAATAATGAAGAATTTCCTCTCGAAAGAGCTCCATTTcagatataaatgaatataaaacaatacTGAACAATcagcaaaaaatattattaaaattaaatactttggctgagtgaaaaaaattaaaaagtactTACAGGGGTCGTTTCttgaacaaaatgtttttcttttaaaaaaaaaaaaaaaatatatatatatataatcgtCAGACTTTTAGAGTCTTGCTTTAGTCAGACGGTCCAAATCCTTTCCTGGAATGTCAGTCAAGTTTGTTAAATTGATTAAAGTGAAACTGATTTCAGTCACCTGCAGGTCATTGGGAGAAATCAGTgaaggctgctgctgctgctgctgctgctgctgctcagaGAGTCACCTGGAGCTGGGTGGAGGGAAGCCTGAGGACCTGTAGGAGCTTGAGGAGTGGTGTTAAGTGAAGGCGCACTCTCTGGGTGCAAAGTGTCCGCGTGAGATGGGTGCAACGTGGCTGACTTCTGGTTAACAGGCTTGTCCGGCGTGGGCGAGCTGGGTTTGCGtacttcctcttcttcttctttttgctcTTTCTCCGGATGGTACTGCTGGAGGCGGATGTGCCACGCCAAGCTGCACACAGCCGACACTGTCTTAAACTGGTGGATGACGTTGCGTGGGATGAAGTAGATGTCGTCATCGCACAGATGTAAGCGCGCGTACCGGATGCCCTCGCGCCGCAGCTGGTTCAGCTTCGCATCGTCCAc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU304932 True 3880 lncRNA 0.38 2 19466692 19470918

Neighbor

gene id symbol gene type direction distance location
ptpn22 NA coding upstream 1356 19439436 ~ 19465336 (+)
atp6ap1b LOC108275744 coding upstream 134718 19322799 ~ 19331974 (+)
itih6 itih6 coding upstream 156858 19295519 ~ 19309834 (+)
pfkfb1 pfkfb1,LOC108276267,LOC108425577,LOC107574688,LOC107673088 coding upstream 172491 19283497 ~ 19294201 (+)
si:dkey-78k11.9 NA coding upstream 190939 19273287 ~ 19275753 (+)
zgc:158263 LOC108276042,LOC108441406 coding downstream 313653 19784571 ~ 19794997 (+)
zbtb48 zbtb48,LOC102780700 coding downstream 368793 19839711 ~ 19848662 (+)
syt6a syt6,syt6a,LOC108433426,LOC107673111,LOC107591076,LOC107593918 coding downstream 429096 19900014 ~ 19965413 (+)
sdf4 sdf4,LOC107591077,LOC107673072,LOC107716138,LOC107687443 coding downstream 566503 20037421 ~ 20043667 (+)
ccnt1 ccnt1,ccnt2,LOC102787965 coding downstream 649032 20119950 ~ 20127658 (+)
G257609 NA non-coding upstream 465 19465730 ~ 19466227 (+)
G257287 NA non-coding upstream 61171 19403496 ~ 19405521 (+)
G257283 NA non-coding upstream 72789 19393537 ~ 19393903 (+)
G257255 NA non-coding upstream 105641 19357511 ~ 19361051 (+)
G257256 NA non-coding upstream 106952 19354727 ~ 19359740 (+)
G257623 NA non-coding downstream 10192 19481110 ~ 19481575 (+)
G257671 NA non-coding downstream 189720 19660638 ~ 19666585 (+)
G257710 NA non-coding downstream 262433 19733351 ~ 19735213 (+)
G257713 NA non-coding downstream 272567 19743485 ~ 19745946 (+)
G257781 NA non-coding downstream 537034 20007952 ~ 20008154 (+)
pkig NA other upstream 244133 19198426 ~ 19222559 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other upstream 532373 18879481 ~ 18934319 (+)
LOC113530386 slc26a9 other upstream 2278315 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 2341741 17071136 ~ 17124951 (+)
G256046 NA other upstream 2958312 16508025 ~ 16508380 (+)
G257622 LOC108276210 other downstream 7384 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 154611 19625529 ~ 19705063 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 919891 20390809 ~ 20398714 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other downstream 1039326 20510244 ~ 20514195 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 1432187 20903105 ~ 20907459 (+)

Expression


Co-expression Network