G257671


Basic Information

Item Value
gene id G257671
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19660638 ~ 19666585 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU305000
GGTTGGCATTAAGCAAAAATACTTTTATTGCGAACTTGTGGTTTTTGCTACTTACAATACATGTTACATTAGAAACACAGAGGCAAGTCATTGGCAGAAGACAGAAGAGTATGTGCTTGTAGTGTGTTTAGCACCATTGGATTTTTCATATACACCAGTAATTTAGAGGTTAACATATGGAAGGTTGATGGTTTCTCTTAAATATAAACTgcgtataaaaaaaatctcccaaAAAGGTCGCTCGTTTCAGCGTCCGACGCTTCTCTTGTCTTTTGCTTCATCGTCACCTGAGATGTGGAGTGTATTTGGAGCTAGGACCTTCCCAGTGTACAGAAACCCCGTCCCTGTGTTCTAGAAGTGTCTAAGCCGTCTCAGAAAGAACAGAGAGGAAACGAAAGGCCGCAGAGTCTTCAAGTATTAAACACAGCTCAGCGCACAAGCTTCAGACACACATTATTAGGACCTAGAATCAACTTCGATGAAAAACAGGCTAGGGTTAATTAGCATCCTTCCCgacacaaatatttaatatagatCCATATATtcatatgcatataaataaaaattcagtgcTGTAAAAACATCATTTCTGACCATATATGATCTGAGCCATCAATGAATgcatgttatgtttttttttccttagatattctctctctctctcttttttaatcatggctaaaaaaaaaaagctactgcAGGACTATGTAAACTGATATCCCATGTTAATCATCCTTCATTATACAACACTTAGTGAAAGATGTAGcgttttctctcactctcttttggTTTATGCAgcacagagtaaaaaaaaaaaaaaaaaaaattttt

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0031214 biomineral tissue development biological_process
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04512 ECM-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU305000 True 831 lncRNA 0.36 2 19660638 19666585

Neighbor

gene id symbol gene type direction distance location
ptpn22 NA coding upstream 195302 19439436 ~ 19465336 (+)
atp6ap1b LOC108275744 coding upstream 328664 19322799 ~ 19331974 (+)
itih6 itih6 coding upstream 350804 19295519 ~ 19309834 (+)
pfkfb1 pfkfb1,LOC108276267,LOC108425577,LOC107574688,LOC107673088 coding upstream 366437 19283497 ~ 19294201 (+)
si:dkey-78k11.9 NA coding upstream 384885 19273287 ~ 19275753 (+)
zgc:158263 LOC108276042,LOC108441406 coding downstream 117986 19784571 ~ 19794997 (+)
zbtb48 zbtb48,LOC102780700 coding downstream 173126 19839711 ~ 19848662 (+)
syt6a syt6,syt6a,LOC108433426,LOC107673111,LOC107591076,LOC107593918 coding downstream 233429 19900014 ~ 19965413 (+)
sdf4 sdf4,LOC107591077,LOC107673072,LOC107716138,LOC107687443 coding downstream 370836 20037421 ~ 20043667 (+)
ccnt1 ccnt1,ccnt2,LOC102787965 coding downstream 453365 20119950 ~ 20127658 (+)
G257623 NA non-coding upstream 179063 19481110 ~ 19481575 (+)
G257608 LOC108276210 non-coding upstream 189720 19466692 ~ 19470918 (+)
G257609 NA non-coding upstream 194411 19465730 ~ 19466227 (+)
G257287 NA non-coding upstream 255117 19403496 ~ 19405521 (+)
G257283 NA non-coding upstream 266735 19393537 ~ 19393903 (+)
G257710 NA non-coding downstream 66766 19733351 ~ 19735213 (+)
G257713 NA non-coding downstream 76900 19743485 ~ 19745946 (+)
G257781 NA non-coding downstream 341367 20007952 ~ 20008154 (+)
G257774 NA non-coding downstream 342054 20008639 ~ 20010104 (+)
LOC113530699 NA non-coding downstream 391666 20058251 ~ 20070248 (+)
G257622 LOC108276210 other upstream 181743 19478302 ~ 19478895 (+)
pkig NA other upstream 438079 19198426 ~ 19222559 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other upstream 726319 18879481 ~ 18934319 (+)
LOC113530386 slc26a9 other upstream 2472261 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 2535687 17071136 ~ 17124951 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 724224 20390809 ~ 20398714 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other downstream 843659 20510244 ~ 20514195 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 1236520 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 1561735 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 1871460 21538045 ~ 21542427 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G155076 NA non-coding NC_048566.1 CM023220.2 50596152 ~ 50596412 (-)