G257774


Basic Information

Item Value
gene id G257774
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20008639 ~ 20010104 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU305133
TGCTACAGTACAAACTCCTGAAGAGTAAATCTGCTTAAAAATGGTGTTttattcacattatttattatcGCTCTCATATTGACATCCTAATACTCACATAAATACTTTAAACAATTGTATTTGTACTCATATATTTGTCTGCTATAAATGAATCGTGAAAAAATGAAGAGGGCTCGTTGTTGACGTGGTTGTCACATCCAAAAAACAAGAATAGAGTGCAACAGGAATCTCTAACATGTCTAATTTGTCATGGAGGCACCTCTTCCCAAGTGCCTGCATACATTCCAAGTACCCTAGCTCAAATCTGGAAGTGTTTTCAAGCGGGCATAATGAATAAACAGAGTTGGAATCATTGCTTTTTATGGTGCGCTTGATCGCCTCCAGGTTTTGCCCTTTTGCAAGCTGGCAAATGTGTTCATTATGAGcaatcacatgattcattttcctAGTGCAGGGTGTTATGGTGCGTTATCTATTGTGTGATCATTAGCAGTCAACAAAGCAGAGGTGTGTACATTAGAAATGATAATGACAACAGCATCTGTCAGGGTCAGTGAGTCCATAGCCAGCGCCTTTACTCAGATTGAAAAATATACGTCCTCTGCTAATAGcagtaaatttttttcaaataatgaaTCCGTATCATAGATATGAGTCAGATTTCAAAGCAACGTTTGTCTTATCATATATCTTTGTATACATCTACTGTAGATTATATATGTATCACAAAATAAATTCTGTTCAATATCATATACTTAAAACcccaataaaacaaaaagataaCTTTTGTTGCATATGAAAATACTCAGAATTTCTTTTAGCCTGCCTACAGCTGAATTAAAGATCCACATTGTCTTTTCATTCCAAGCTGTGATAAGAATTGCCTCCGACTGTCTTTTACCGACGGCGTAAAACAGATGTGCCACAGTCAGCGCAGTGGTTCAGTCATCTCATACTGAAGCATTTGCAGAGCAGTTAGCTGCCTCTGGCTGTCCACTATTTGATTCAGTGTTGGATGGCAGTCCAAAAGAAAGCAGTCTTAGGTGGGAGGAAAAACGAAGGGAGGCTATACCCCCAACAGCATGCCCATGAAATCCGAGCCGTTCTGTATCGTGATTGAAGCTCCTGCTGCATTGTCCACAAATATGGAGGTGTACTGACCAGCCGGAGCTCCAGCAATCCGTGAACATACACTGTGAATATCTTGCTGTTGCTCTCCAAGCCAACGATCATCTCCAAAGACCTACATCAatgcattaataataagaaGCATTAAGAAAAGTGATTTTCAGAAATCTGTCACAGTCTGGTTAGGAGGCAAATCTATCAAAGTTCCAGCAAAGAAGCTGTACGATATaagaaaaatggcaaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305133 True 1375 lncRNA 0.39 2 20008639 20010104

Neighbor

gene id symbol gene type direction distance location
syt6a syt6,syt6a,LOC108433426,LOC107673111,LOC107591076,LOC107593918 coding upstream 43226 19900014 ~ 19965413 (+)
zbtb48 zbtb48,LOC102780700 coding upstream 159977 19839711 ~ 19848662 (+)
zgc:158263 LOC108276042,LOC108441406 coding upstream 213642 19784571 ~ 19794997 (+)
ptpn22 NA coding upstream 543303 19439436 ~ 19465336 (+)
atp6ap1b LOC108275744 coding upstream 676665 19322799 ~ 19331974 (+)
sdf4 sdf4,LOC107591077,LOC107673072,LOC107716138,LOC107687443 coding downstream 27317 20037421 ~ 20043667 (+)
ccnt1 ccnt1,ccnt2,LOC102787965 coding downstream 109846 20119950 ~ 20127658 (+)
pmelb LOC108275940 coding downstream 119602 20129706 ~ 20138298 (+)
LOC113530927 tuba1a,Tuba1a,tuba1c,LOC108255233,LOC108275946,LOC107664173,LOC108431527,LOC102311436,LOC105935211 coding downstream 137074 20147178 ~ 20155096 (+)
gdap1l1 gdap1l1,LOC107594051,LOC107664149,LOC108433413,LOC107707014,LOC107697944 coding downstream 173133 20183237 ~ 20198652 (+)
G257781 NA non-coding upstream 485 20007952 ~ 20008154 (+)
G257713 NA non-coding upstream 262693 19743485 ~ 19745946 (+)
G257710 NA non-coding upstream 273426 19733351 ~ 19735213 (+)
G257671 NA non-coding upstream 342054 19660638 ~ 19666585 (+)
G257623 NA non-coding upstream 527064 19481110 ~ 19481575 (+)
LOC113530699 NA non-coding downstream 48147 20058251 ~ 20070248 (+)
G257813 NA non-coding downstream 55373 20065477 ~ 20066008 (+)
G257814 NA non-coding downstream 89126 20099230 ~ 20099498 (+)
G257802 kansl2,LOC107716132,LOC107687436 non-coding downstream 90904 20101008 ~ 20104040 (+)
G257803 kansl2,LOC107716132,LOC107591080 non-coding downstream 98286 20108390 ~ 20109226 (+)
si:ch73-206d17.1 LOC108275771 other upstream 303576 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 529744 19478302 ~ 19478895 (+)
pkig NA other upstream 786080 19198426 ~ 19222559 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other upstream 1074320 18879481 ~ 18934319 (+)
LOC113530386 slc26a9 other upstream 2820262 17175701 ~ 17188377 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 380705 20390809 ~ 20398714 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other downstream 500140 20510244 ~ 20514195 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 893001 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 1218216 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 1527941 21538045 ~ 21542427 (+)

Expression


Co-expression Network