ubxn10 (ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345)


Basic Information

Item Value
gene id ubxn10
gene name ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20903105 ~ 20907459 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU305939
TGCCAAGGAGACGTTACTGTATTGGCAACTTGAATGACGCCACCGAAAATGTCCGCGTGCGTAATTTTATCACCCAGCGACAGAATAAAGCTTAAGGTGAATTTCAGTGAGACCTAATGGACTTACTGAAGTGTTCCTCGATGGCTCTGAGCACGGCCATGCTCTCCTCGCTGTCCACCATGTTGATGGCCAGACCTCGCTTCCCGAAGCGCCCCGTCCTGCCGATCCTGTGCAGGTAGGTCTCGTTGTCCGGGTTGCCGTCTTTGTCCAGGGGGAGGTCAAAGTTGATCACCACGGAAACCTGCTCTACGTCGATACCTGCTGAGCACAAATCAAGAGTTCGTTCCTTattcactatgtagtgcactatctGGGGGTCAGCAACTGAATTCTCATTGgacaaat
>TU305940
TGCCAAGGAGACGTTACTGTATTGGCAACTTGAATGACGCCACCGAAAATGTCCGCGTGCGTAATTTTATCACCCAGCGACAGAATAAAGCTTAAGAAGGAAACATGCATGTGATAAGACCAAAATCCGCCAAAGGACGCACCAGACCCAAAGTGACCGAGGCCCGTACTGCAGATGATGAGCTTCTACATGAGAATCGTCCATTTTCCCCACACCCTCCTTCTCATCCTCCTCGTCCTCCACCCACGCCAAGCCACACACCAAGCCACAGGTTCGAGTCGTCTCCATCCCCCCGTGCTTTCTTTAGGCACGACAATCCGAGTTCTGCGGTTGAGAAAGCCCTTGACATCCCGGTGTTGTCgctaaacaaatacaaagtcCTCCCGTCTATCGAGAAGAGATCAAAAGAAGAGGCGTCCAGCTCAGACATGGAGGAAAAGTCCTCGAGGTCTAGACTCCATGCCTGTCGTTTCTTCAGGAGTGATCAGGAGACGGAGAGGGCGTCTAGCAGGACTGTCAGGTCGACGTCTTGGTGCCAGGAGGGTGAGACAGGGGTTCTGCTTGCTCTCCGGACTCCGTGCGGTCAGAGGCTGAAGTGCCAGTTCcaacccacagacacactccggGATGTCGTCGCTACAGCGGAGGACCAATCCGGAAAACGGTACGAACACGTTCTGATCGAGACCATGGAGGTTCCTCGGAGGAGCTTCACCAATCTGAACATGACTCTCTCTCAGTGTGGCATCATTAATAAATCAGTCTTATGCATCAGCCTCAAA
>XM_026921039.2
AGCGAACTAGCCTAGCGTGCGACTGACGCACGTGAGCCGTTGCCAAGGAGACGTTACTGTATTGGCAACTTGAATGACGCCACCGAAAATGTCCGCGTGCGTAATTTTATCACCCAGCGACAGAATAAAGCTTAAGAAGGAAACATGCATGTGATAAGACCAAAATCCGCCAAAGGACGCACCAGACCCAAAGTGACCGAGGCCCGTACTGCAGATGATGAGCTTCTACATGAGAATCGTCCATTTTCCCCACACCCTCCTTCTCATCCTCCTCGTCCTCCACCCACGCCAAGCCACACACCAAGCCACAGGTTCGAGTCGTCTCCATCCCCCCGTGCTTTCTTTAGGCACGACAATCCGAGTTCTGCGGTTGAGAAAGCCCTTGACATCCCGGTGTTGTCgctaaacaaatacaaagtcCTCCCGTCTATCGAGAAGAGATCAAAAGAAGAGGCGTCCAGCTCAGACATGGAGGAAAAGTCCTCGAGGTCTAGACTCCATGCCTGTCGTTTCTTCAGGAGTGATCAGGAGACGGAGAGGGCGTCTAGCAGGACTGTCAGGTCGACGTCTTGGTGCCAGGAGGGTGAGACAGGGGTTCTGCTTGCTCTCCGGACTCCGTGCGGTCAGAGGCTGAAGTGCCAGTTCcaacccacagacacactccggGATGTCGTCGCTACAGCGGAGGACCAATCCGGAAAACGGTACGAACACGTTCTGATCGAGACCATGGAGGTTCCTCGGAGGAGCTTCACCAATCTGAACATGACTCTCTCTCAGTGTGGCATCATTAATAAATCAGTCTTATGCATCAGCCTCAAAGACAGTCCTTAACATTTCAAAAAGGTTCCTATAAACAAtttatctttaataataaatagtggAGAATATTGGTTTTATTCACTGTTGAAATGAACAGACATTTGCTTGCACTACATCACGCCATCTGCTTACAGTACAACGCCATGTCTTTTTAAACAGGATCGCCCCTAActttcagttatttattataacattttaaaatttttatattttctcctATTTGTGCAAAGTGAACTTGCTTCAACGGGACATCCTGACAATGATCCTTCACccaaataataatttcagcaagcaaccacagcgctgttgaattctcaaatctc
>XM_034312060.1
ACAGCGAACTAGCCTAGCGTGCGACTGACGCACGTGAGCCGTTGCCAAGGAGACGTTACTGTATTGGCAACTTGAATGACGCCACCGAAAATGTCCGCGTGCGTAATTTTATCACCCAGCGACAGAATAAAGCTTAAGTGCTGTTTCATTTTCTAGAAGGAAACATGCATGTGATAAGACCAAAATCCGCCAAAGGACGCACCAGACCCAAAGTGACCGAGGCCCGTACTGCAGATGATGAGCTTCTACATGAGAATCGTCCATTTTCCCCACACCCTCCTTCTCATCCTCCTCGTCCTCCACCCACGCCAAGCCACACACCAAGCCACAGGTTCGAGTCGTCTCCATCCCCCCGTGCTTTCTTTAGGCACGACAATCCGAGTTCTGCGGTTGAGAAAGCCCTTGACATCCCGGTGTTGTCgctaaacaaatacaaagtcCTCCCGTCTATCGAGAAGAGATCAAAAGAAGAGGCGTCCAGCTCAGACATGGAGGAAAAGTCCTCGAGGTCTAGACTCCATGCCTGTCGTTTCTTCAGGAGTGATCAGGAGACGGAGAGGGCGTCTAGCAGGACTGTCAGGTCGACGTCTTGGTGCCAGGAGGGTGAGACAGGGGTTCTGCTTGCTCTCCGGACTCCGTGCGGTCAGAGGCTGAAGTGCCAGTTCcaacccacagacacactccggGATGTCGTCGCTACAGCGGAGGACCAATCCGGAAAACGGTACGAACACGTTCTGATCGAGACCATGGAGGTTCCTCGGAGGAGCTTCACCAATCTGAACATGACTCTCTCTCAGTGTGGCATCATTAATAAATCAGTCTTATGCATCAGCCTCAAAGACAGTCCTTAACATTTCAAAAAGGTTCCTATAAACAAtttatctttaataataaatagtggAGAATATTGGTTTTATTCACTGTTGAAATGAACAGACATTTGCTTGCACTACATCACGCCATCTGCTTACAGTACAACGCCATGTCTTTTTAAACAGGATCGCCCCTAActttcagttatttattataacattttaaaatttttatattttctcctATTTGTGCAAAGTGAACTTGCTTCAACGGGACATCCTGACAATGATCCTTCACccaaataataatttcagcaagcaaccacagcgctgttgaattctcaaatctc
>XR_004579743.1
ACAGCGAACTAGCCTAGCGTGCGACTGACGCACGTGAGCCGTTGCCAAGGAGACGTTACTGTATTGGCAACTTGAATGACGCCACCGAAAATGTCCGCGTGCGTAATTTTATCACCCAGCGACAGAATAAAGCTTAAGGTGAATTTCAGTGAGACCTAATGGACTTACTGAAGTGTTCCTCGATGGCTCTGAGCACGGCCATGCTCTCCTCGCTGTCCACCATGTTGATGGCCAGACC

Function

symbol description
ubxn10 Acts upstream of or within determination of heart left/right asymmetry. Predicted to be located in cilium. Orthologous to human UBXN10 (UBX domain protein 10).

NR:

description
UBX domain-containing protein 10

GO: NA

KEGG:

id description
K24352 UBXN10; UBX domain-containing protein 10

RNA

RNA id representative length rna type GC content exon number start site end site
TU305939 False 405 lncRNA 0.51 2 20903147 20907459
TU305940 False 782 TUCP 0.53 2 20903147 20905073
XM_026921039.2 False 1145 mRNA 0.48 2 20903107 20905396
XM_034312060.1 True 1165 mRNA 0.47 2 20903105 20905396
XR_004579743.1 False 238 misc_RNA 0.52 2 20903105 20907250

Neighbor

gene id symbol gene type direction distance location
cptp cptp,LOC108433359,LOC107697856,LOC107599683,LOC107706969,LOC107664144,LOC107594044 coding upstream 334 20900122 ~ 20902771 (+)
LOC113530777 LOC108276216 coding upstream 16596 20883692 ~ 20886509 (+)
march9 march9,LOC107593952,LOC107599679 coding upstream 151234 20737744 ~ 20751871 (+)
tspan31 tsn31,tspan31,LOC107599072,LOC107593953,LOC108433386 coding upstream 173172 20719865 ~ 20729933 (+)
LOC113530407 gpr182,LOC108275868 coding upstream 211491 20689186 ~ 20691614 (+)
vwa5b1 vwa5b1,LOC107599492 coding downstream 11629 20919088 ~ 20953971 (+)
fam43b fam43b coding downstream 90210 20997669 ~ 20999732 (+)
LOC113530567 LOC108275599 coding downstream 145211 21052670 ~ 21056506 (+)
cdaa cda coding downstream 152317 21059776 ~ 21062377 (+)
pink1 pink1 coding downstream 155636 21063095 ~ 21067217 (+)
G258362 NA non-coding upstream 112960 20786242 ~ 20790145 (+)
G258275 LOC108276173 non-coding upstream 146567 20682370 ~ 20756538 (+)
LOC117599266 NA non-coding upstream 191147 20708115 ~ 20711958 (+)
LOC117599265 NA non-coding upstream 203437 20696985 ~ 20699668 (+)
G258273 NA non-coding upstream 222167 20663682 ~ 20680938 (+)
LOC117599282 NA non-coding downstream 1357 20908816 ~ 20911082 (+)
G258439 NA non-coding downstream 68439 20975898 ~ 20976359 (+)
G258460 NA non-coding downstream 177923 21085382 ~ 21088222 (+)
G258476 selenoi,si:ch211-197l9.4,LOC107549067 non-coding downstream 185870 21093329 ~ 21093844 (+)
G258483 iyd non-coding downstream 196255 21103714 ~ 21105101 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 388910 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 504391 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1198042 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1424210 19478302 ~ 19478895 (+)
pkig NA other upstream 1680546 19198426 ~ 19222559 (+)
si:ch73-290k24.5 LOC108275473 other downstream 320861 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 630586 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1763939 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2464285 23371744 ~ 23383653 (+)
G259993 NA other downstream 2480079 23387538 ~ 23389314 (+)

Expression


Co-expression Network