G258459 (ppp1r14c,LOC107697847,LOC107738512,LOC107664259)


Basic Information

Item Value
gene id G258459
gene name ppp1r14c,LOC107697847,LOC107738512,LOC107664259
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21115050 ~ 21132053 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU306028
ccacacactacatactaagaaaaaaaagaacattcatAACTCATACAGTTAATAAAAATCTTTGAGTTtcataataaacagtaatatcaataaggtataaaaaaaaaaaaatgatatcataCATAAGTGTTGGACTAAAAAGTTCCCTTCATGCCACTGAAACACATGCAAAAGTAAAGACACGCTTCTTCTAATGCTGGCAGAATTCATTAAAAGAATAATAAGCTACGCCAAAGCCCTGAAAAACCCTGAAGAATTCTTGAgtacctaaaacacacacacagtataagaGACCTTTAAATATTTACCTTATAATTCAACAGGCCCACAGAAAGGAACCTGTCCAATCCACCAAGATGCTCCGTCTCGTCCAccattaaacactgaacaagTGAACATAACGAGACAGGAAACGCTGAAATCAGGACAACGGACATCTCGCTCATCCAGCCATGAGAAAACGAATGAGAGGAGCTTATCAAGATCAAGTAGAAAATCTCCTTCTCTGAATACATGAAGCCCAAACGATCCCACCACTGCTTGTGAAGAATTAAAAAGGGAACAGTAACAGCACCATCATTTCTTTCCAGGTTACTGGACAATTTGTGTATCGTCTCAGCAGGAGGAGTGTGACCTTTGTGACGTGAAGACTAGTGCAGCGATTACGTTACACAAGTTCACTTACAGTCACAGCTTTCTATACAAAGTCCACCATTTTGCATTCTTTGGCAACCTACGTACAAaaccaaagaagaaaaaaaacgagtgtagactaaaatttatttatttaattaaataaaatatccaaATGAAGCTAGTTGAAACGGCTCTATAGCACTCGCTATACAGTAGCTACATGTCAGCCATAAAACAGgccttatcttttttttttgctttttacatCTAAACTGTGAGCTACAAATTTCCCTTTACACACTGTTTCAGTGATGTTTCTTTAGCTACAAGACTCAAAAGTGTATAACGAGGTACACATTACCAAggggggaagaagaagaagaaaaaaaaaaaaaagagatatacTGATATGCTAGTTAGATTGTAAtatcaatgaatgaatgttggGAAGATGAATCAAAATGCTCAAActaaacaggtcagccaagaaTGATGAATTCAAACCCTTGACCTTTAAAGGCGAAGGCatacaatttaaaacaaaaaaaaaaagacaatgtcTTACAATAAGAGCACAGACATAACAAAAaaagactgtacaaaaaaacccaacattTTGTCATGTAAATAACATTATAggcttttacaaaaaaaaactttgaggTTGTGGTAGGCTGTGCTAAGTGAACGCTACGATCTATCAATTTTGGACGCAAATACTCGAGTCCTGTCTGTAGTCCAGGCTATGAGGAGCTGGTTAGGGCGAACCGAGCGTGGGCTGGATGATTGATTTTGAGACTTGCAGTCATTGTAGCTGGATTGTCGTTGCCGTTTCATGAGCACTTAAAGGCTTTTCTTCTGTGGAGCACCGAGTTTCCTCATTCCCCTTATCCTTCCGAGGAGCTCCTGTACGAAAGCATCAGTAGGCTTATAGCAGTCTGTGAGGGATTCCTGTAATTTTACAGCTCTCTCGTCTTCACTGTTCACCTCCAGAAGATCATCAATGTCTATCTCGACCTCAGGCATCTCCTCTTCCTCGCAGTCGTACAGCTCGCTCAGCTGCTCGATGATCCACTCTTCCAGCACGAGTCTCTTCCGCAGCTCTTTCCGGTCATACTTCACGGTGACTTTGCCCTGCTTCTTCTGCACCGGGTCGTCCCGAGGCACCGGGCCGTTGCCCACGCAGCCCACACCGGGTGCCGTCTGAAAGAATACCCGGCCCGGGGACGTGGGGATCTGCGCGGACGGCTCGGGGCTGGCGGCGGACATGGCGCAGAGGTCACGAGCGAACAGCAGCAAAAACGAGCGGCGCCTCAAA

Function

symbol description
ppp1r14c Predicted to enable protein serine/threonine phosphatase inhibitor activity. Predicted to act upstream of or within regulation of phosphorylation. Predicted to be located in cytoplasm. Orthologous to human PPP1R14C (protein phosphatase 1 regulatory inhibitor subunit 14C).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306028 True 1954 lncRNA 0.42 4 21115050 21132053

Neighbor

gene id symbol gene type direction distance location
agmat agmat,LOC102790280,LOC105912720 coding upstream 41993 21068173 ~ 21073057 (+)
pink1 pink1 coding upstream 47833 21063095 ~ 21067217 (+)
cdaa cda coding upstream 52673 21059776 ~ 21062377 (+)
LOC113530567 LOC108275599 coding upstream 58544 21052670 ~ 21056506 (+)
fam43b fam43b coding upstream 115318 20997669 ~ 20999732 (+)
si:ch73-217b7.1 map7 coding downstream 6172 21138225 ~ 21171926 (+)
LOC113530738 si:ch73-290k24.6,LOC108275467,LOC106608414,LOC107396729,LOC106510918 coding downstream 70437 21202490 ~ 21212264 (+)
egr4 LOC108275472,LOC107734701 coding downstream 93288 21225341 ~ 21227743 (+)
LOC113530257 LOC108275533,LOC108435580,LOC107565311,LOC107570205 coding downstream 110193 21242246 ~ 21257288 (+)
LOC113530283 LOC108276019 coding downstream 143377 21275430 ~ 21287608 (+)
G258462 NA non-coding upstream 7035 21107347 ~ 21108015 (+)
G258483 iyd non-coding upstream 9949 21103714 ~ 21105101 (+)
G258476 selenoi,si:ch211-197l9.4,LOC107549067 non-coding upstream 21206 21093329 ~ 21093844 (+)
G258460 NA non-coding upstream 26828 21085382 ~ 21088222 (+)
G258439 NA non-coding upstream 138691 20975898 ~ 20976359 (+)
G258680 NA non-coding downstream 222387 21354440 ~ 21354730 (+)
G258689 NA non-coding downstream 252238 21384291 ~ 21386101 (+)
G258753 NA non-coding downstream 347179 21479232 ~ 21556438 (+)
G258758 NA non-coding downstream 367925 21499978 ~ 21510994 (+)
LOC113530300 NA non-coding downstream 468569 21600622 ~ 21602468 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 207591 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 600855 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 716336 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1409987 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1636155 19478302 ~ 19478895 (+)
si:ch73-290k24.5 LOC108275473 other downstream 96267 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 405992 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1539345 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2239691 23371744 ~ 23383653 (+)
G259993 NA other downstream 2255485 23387538 ~ 23389314 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022585 ppp1r14c coding NC_007134.7 CM002907.2 39807857 ~ 39849155 (-)