G258689


Basic Information

Item Value
gene id G258689
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21384291 ~ 21386101 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU306276
GTTGGTATGGcgctaaaaaagaaaagagctaAGGTTGAGTTTGGGGGATGAGGTCACAACTTGGGACGCTGCATGGCAACAAAACAAATgccaaatattaaacatgtccAGAGGTTTGAAGTAATAAGGTTATACTTTATTATGTTACTGTAATTGAGTATATTTTTTAAGTATCTGTGCTTTccttgaatttttctttttgaccCTTACTTTCAGCATTTCCAAAGGAAAACTTGCTAGTCTGTTACTTTTGAACATCACTACGTTTCACTAGACTGTATTCATGCTACAACGTTCTACAGCTTCCCAAAGGTGCTCTGTTGGTTTCAGGTCTCATCACTGGGGAGGTCTTTGACTCGATGTCATGTTCATGTagccagtttgagatgactcatgctggaagtagccgtTATAAGatgagtaaattgtggccaCGTGGTCAGCAGTAATACTCAGAtggcattcaaacaatgctCAGTGGGTATTGGTAAAGGGCTCAGTGTgtgtcaagaaaacattccccacaccattgcaccaccaccaccaccaccaccaacttGAACTGTTAACAGAGCAGGTTGGATTCATGGATTCttgctgttgatgccaaattctgactaCCCTGCAAGACTGATCAGACCAACTATCCTCAACTGTCCAGTTCAGGTGAacttgtgcccactgtagcctcttgttcttggctgagaggtGTGGAACCTGATgcggtcttctgctcttgtagcccatccacttcaaggtttgaCATATTGTgcaatctgagatgcttttcagcttaCCATGCTTGTAAAGAGTGGTGCTTGCAGAACTGAAGTATCGGCATCGATGTCTCTCTAAGCTAAATTGTGCAATCTgcgatgcttttcagctcagcATGCTTGTAAAGAGTGGTGCTTGCAGAATTGAAGTACTGGCATCGATGTCTCTCTAAGTTGAATTGTGCGATCTGAGATGCTTCTCTGCTTACCACGCTTGTAAAGAGTGGTGCACGCAGAACTGTGGTATAGGCATCAATGTCTCCCTTAAGTTAaattgtgcattctgaggtgcttttcaGCTCAACACACTGGTAAAGAGTGGTGTTTTCAGAACTGATGTATCGGCATCAAAGTCTCCCTTACGTTACAgcgtgcattctgagatgcttttcagctcaaaAGCGCTTGTAATTTGAGTTACTGAAGCCTTTCTGTGAGTTCGGAACCAGACTGGCTAtcctcctctgacctctctcatcaacaaggcgttcattttaaacattttgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306276 True 1283 lncRNA 0.43 2 21384291 21386101

Neighbor

gene id symbol gene type direction distance location
calcrl2 LOC108276023 coding upstream 32275 21323924 ~ 21352016 (+)
ttc29 ttc29 coding upstream 61068 21315381 ~ 21323223 (+)
LOC117599257 NA coding upstream 71496 21310075 ~ 21312795 (+)
LOC113530283 LOC108276019 coding upstream 96683 21275430 ~ 21287608 (+)
LOC113530257 LOC108275533,LOC108435580,LOC107565311,LOC107570205 coding upstream 127003 21242246 ~ 21257288 (+)
LOC113530406 LOC108276167,LOC105022368 coding downstream 66167 21452268 ~ 21455848 (+)
LOC117599284 NA coding downstream 135245 21521346 ~ 21535366 (+)
zmp:0000001174 rai2,LOC107653213,LOC107550168,LOC107752425 coding downstream 225702 21611803 ~ 21626745 (+)
LOC113530651 cdkl5,LOC108276197 coding downstream 288236 21674337 ~ 21748403 (+)
LOC113530955 ap1s2,zgc:162858,LOC108275964,LOC107564403,LOC107653210,LOC103463884,LOC106942561,LOC108435569,LOC106921341,LOC102795551,LOC107095773,LOC101477195,LOC104928285,LOC107752427,LOC107396045,LOC101174095 coding downstream 368746 21754847 ~ 21795371 (+)
G258680 NA non-coding upstream 29561 21354440 ~ 21354730 (+)
G258459 ppp1r14c,LOC107697847,LOC107738512,LOC107664259 non-coding upstream 252238 21115050 ~ 21132053 (+)
G258462 NA non-coding upstream 276276 21107347 ~ 21108015 (+)
G258483 iyd non-coding upstream 279190 21103714 ~ 21105101 (+)
G258476 selenoi,si:ch211-197l9.4,LOC107549067 non-coding upstream 290447 21093329 ~ 21093844 (+)
G258753 NA non-coding downstream 93131 21479232 ~ 21556438 (+)
G258758 NA non-coding downstream 113877 21499978 ~ 21510994 (+)
LOC113530300 NA non-coding downstream 214521 21600622 ~ 21602468 (+)
G258883 NA non-coding downstream 363910 21750011 ~ 21752454 (+)
LOC117599289 NA non-coding downstream 584277 21970378 ~ 21982618 (+)
si:ch73-290k24.5 LOC108275473 other upstream 145292 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 476832 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 870096 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 985577 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1679228 19625529 ~ 19705063 (+)
LOC117599233 NA other downstream 151944 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1285297 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 1985643 23371744 ~ 23383653 (+)
G259993 NA other downstream 2001437 23387538 ~ 23389314 (+)
G260415 NA other downstream 2646126 24032227 ~ 24032724 (+)

Expression


Co-expression Network