G258753


Basic Information

Item Value
gene id G258753
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21479232 ~ 21556438 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU306345
CATCAAATCAGGTTTCTAAATCCAGCATAAATCTCAGTCTCAGAAGCAGTGAAGGGTTCTGGTCGTAATTCAGcatcaaatgaatgaaaaagtttCTCCCTCCTTATCTGAGACTATGTAACTTGTGAATCTTCTCTGGTACTCAGGGGCGCCGCTAGGGTTTCTGGGCCCCCTGGCTAATCTGTACTCCAGGCCCCAAGGCCCCATAGGTAAAGGAATAGCTTATACAAGAACAAGGAAATGtgtcattgttgttattattattattattattattattattattattattattagtcaccGAGTGAATTATAAGtttcacacaccagcacacacaaacagcgaCAGGATCACTGAACTCGAGAAAAATCAGTTCTGTTCGTGAATCAATCATTCAGACTAGTTTTATCAGTGGGTTTCTCCAATTCATTGAATCGAACCAACTCAAACGATTCACTCACAAATCGGACGTTATTACAGCACTTATTTCAGAAACTCACCCGTGATCattaaagcagatttacagaactACAGCgtaaattaaacagaaaatcgTGATCAATTTGTGGGGACAAAAACTGTGTCCAGAccgtgttttaaaaaatgaaaaaatgaaaaatcttgtgttgtctgtgtgctttttgtaACACATTACctccccaacagagtgtTTAACACTGATAGATTTCTTAGTCCTTAGTTTcttagtgaaccagtatcatcTGATAGACACTTCAAAGCATTTCTGTAATTCCCTCTGGATAAGGGAGTCTGTTCTTTTACTTacttgactcttttttttt
>TU306346
aaaaatgaaaaatcttgtgttgtctgtgtgctttttgtaacacattacctccccaacagagtgtTTAACACTGATAGATTTCTTAGTCCTTAGTTTcttagtgaaccagtatcatcTGATAGACACTTCAAAGCATTTCTGTAATTCCCTCTGGATAAGGGAGTCTGTTCTTTTACTTACttgactcttttttttttaaattgagctTAACAGTCTTTGTCCATTCGTTAATCTATCTAACAATCTATCTCAATACTCAGTAACCTGTCTTTGTATTTTCTTTGGTGTgggttttgtcttttttgttattaaaagaattaaGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306345 True 803 lncRNA 0.37 2 21479232 21496565
TU306346 False 325 lncRNA 0.32 2 21551918 21556438

Neighbor

gene id symbol gene type direction distance location
LOC113530406 LOC108276167,LOC105022368 coding upstream 23384 21452268 ~ 21455848 (+)
vdra vdr,vdra,LOC103045919,LOC108435544,LOC107701250,LOC107702164,LOC107565314 coding upstream 41369 21378129 ~ 21437863 (+)
calcrl2 LOC108276023 coding upstream 127216 21323924 ~ 21352016 (+)
ttc29 ttc29 coding upstream 156009 21315381 ~ 21323223 (+)
LOC117599257 NA coding upstream 166437 21310075 ~ 21312795 (+)
zmp:0000001174 rai2,LOC107653213,LOC107550168,LOC107752425 coding downstream 55365 21611803 ~ 21626745 (+)
LOC113530651 cdkl5,LOC108276197 coding downstream 117899 21674337 ~ 21748403 (+)
LOC113530955 ap1s2,zgc:162858,LOC108275964,LOC107564403,LOC107653210,LOC103463884,LOC106942561,LOC108435569,LOC106921341,LOC102795551,LOC107095773,LOC101477195,LOC104928285,LOC107752427,LOC107396045,LOC101174095 coding downstream 198409 21754847 ~ 21795371 (+)
syap1 syap1 coding downstream 243386 21799824 ~ 21806660 (+)
fbxl5 fbxl5,LOC101481374 coding downstream 251876 21808314 ~ 21828623 (+)
G258689 NA non-coding upstream 93131 21384291 ~ 21386101 (+)
G258680 NA non-coding upstream 124502 21354440 ~ 21354730 (+)
G258459 ppp1r14c,LOC107697847,LOC107738512,LOC107664259 non-coding upstream 347179 21115050 ~ 21132053 (+)
G258462 NA non-coding upstream 371217 21107347 ~ 21108015 (+)
G258483 iyd non-coding upstream 374131 21103714 ~ 21105101 (+)
LOC113530300 NA non-coding downstream 44184 21600622 ~ 21602468 (+)
G258883 NA non-coding downstream 193573 21750011 ~ 21752454 (+)
LOC117599289 NA non-coding downstream 413940 21970378 ~ 21982618 (+)
G259086 NA non-coding downstream 449892 22006330 ~ 22006530 (+)
G259087 NA non-coding downstream 450270 22006708 ~ 22007039 (+)
si:ch73-290k24.5 LOC108275473 other upstream 240233 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 571773 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 965037 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 1080518 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1774169 19625529 ~ 19705063 (+)
LOC113530514 LOC108275916 other downstream 1114960 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 1815306 23371744 ~ 23383653 (+)
G259993 NA other downstream 1831100 23387538 ~ 23389314 (+)
G260415 NA other downstream 2475789 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 2712139 24268577 ~ 24269267 (+)

Expression


Co-expression Network