G259690 (ctnnbl1,LOC106942865)


Basic Information

Item Value
gene id G259690
gene name ctnnbl1,LOC106942865
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23277434 ~ 23277909 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU307418
CGTCGATGAGGACCTCGGCTCCTTCCTCGCTCTCGTTGAGCGTATCGACGTCTGTGAGCTCCTGCAGCAGGTCCACCACCGCGATGGCgataTCAGTGTTTTCGTGGCTCAGCAGGCCGAGCAGAGACTGCACAGCGTTCAGCTCCACCAGCAGGTGATACAGCTCAGGGATGGTGGTGATCACGTGCATCTCCTGGATGATGTCATTCAGGTCCAGCTCAGACTCCATGAA

Function

symbol description
ctnnbl1 Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Human ortholog(s) of this gene implicated in colorectal cancer and morbid obesity. Orthologous to human CTNNBL1 (catenin beta like 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU307418 True 232 lncRNA 0.58 2 23277434 23277909

Neighbor

gene id symbol gene type direction distance location
tti1 tti1 coding upstream 82179 23186491 ~ 23195255 (+)
tgm2a tgm2 coding upstream 98111 23172257 ~ 23179323 (+)
si:dkey-65j6.2 kiaa1755 coding upstream 105683 23152604 ~ 23171751 (+)
myl9a LOC108276062,LOC103022187,LOC108439470,LOC107737046,LOC107653232,LOC107569439 coding upstream 265973 23006566 ~ 23011461 (+)
scube3 scube3,LOC108276393,LOC108439473,LOC106566910 coding upstream 325504 22859162 ~ 22951930 (+)
znf341 znf341 coding downstream 41452 23319361 ~ 23331266 (+)
LOC113530556 NA coding downstream 129900 23407809 ~ 23411399 (+)
LOC113530872 NA coding downstream 136908 23414817 ~ 23421228 (+)
LOC113530918 NA coding downstream 144285 23422194 ~ 23433656 (+)
LOC113530555 NA coding downstream 162587 23440496 ~ 23443625 (+)
G259540 LOC108276061 non-coding upstream 212865 23026446 ~ 23064569 (+)
G259539 NA non-coding upstream 254986 23021970 ~ 23022448 (+)
G259536 NA non-coding upstream 261538 23013384 ~ 23015896 (+)
G259498 NA non-coding upstream 435695 22839217 ~ 22841739 (+)
G259403 NA non-coding upstream 691625 22584557 ~ 22585809 (+)
G259962 NA non-coding downstream 29846 23307755 ~ 23308592 (+)
G259968 NA non-coding downstream 54771 23332680 ~ 23348937 (+)
G259978 NA non-coding downstream 66953 23344862 ~ 23362290 (+)
G260009 NA non-coding downstream 190917 23468826 ~ 23469057 (+)
G260011 NA non-coding downstream 196004 23473913 ~ 23474444 (+)
LOC113530514 LOC108275916 other upstream 596892 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 1735007 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 2038435 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 2369975 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 2763239 20510244 ~ 20514195 (+)
LOC117599309 NA other downstream 93835 23371744 ~ 23383653 (+)
G259993 NA other downstream 109629 23387538 ~ 23389314 (+)
G260415 NA other downstream 754318 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 990668 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 1122675 24400584 ~ 24453538 (+)

Expression


Co-expression Network