znf341 (znf341)


Basic Information

Item Value
gene id znf341
gene name znf341
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23319361 ~ 23331266 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920165.2
CGCAGAAGAAGAAGACGCGGTTGCGCGGCGCTGCTGCTTGGCTACAGAGCTCCAGCCGTCATCATCCTCACCGTCATCATGTCGCAGGCGATATTTGAGGTGTTAGAAGGCATGGACAATCAGACCGTCCTCGCTGTGCAGTCCTTCCTGGATGGTCAAGCCGGCGTCCCTGATCACAGCAATCAGACCGTCTCGGGATCCGCCATCCAGCCAATGGatgaTGATGACATCTTCCTGTGTGGAAAGTGTAAGAAGCAGTTCAACTCGTTGCCGGCGTTCTTGACGCACAAGAGGGAGCAATGCCAGCAGAACACCCCCTCGCTCGCCACCGTGTCACTGGCGTCCAGCAACACCTACACACCTGTACCCTCAGTCAGCGCCGTGCCACAACCACCGGCCAACAGACAGGTGTCGACGTACATCACGGTGCCGCCgtctcctctcacacacaccctggtgCAGGGGAACGTTCTGGTGAGCGATGAGGTTCTCATGTCGGCCATCTCAGCGTTCACGTCCATGGACACGCCAGTCACGGCCATGCAGGCTTCttctcagAGCAATTTGAGCATGCCTAGTGCAACTTCATACCTGCAGCACCACCCACAGGCCTCCCAGCCCCTCCCACTGGCCCAAGCTCCACCCCTTTCTGCCCAGGTTCCCTCCAGTATCAACAGCTCAGTAGTGCAGGTGTACAGCACGCTGCCCCCGATGGCTGGAGGAGGAAACGCAGAGGTCCACACACTCGGCCTCCAACCATTTCAGTCTGTTCAgggTGGTGGTCAGTGTGTGGACAGTCAGAGTGCAGCATTCAGCAGCGCTCCTGTCTACAGTTCGGCTAAACCAGCACAGAAGCCGAAGAGCTGCAGCAGCACCGTGGCTCTGAATGAGCTGAGCGAATACGACAAGGTCATCATCCCCAAAAAGACCCGCAACTCCAAGAAAGGACACGAAGGTCAAACAAAAGCCAAAGGTCAGAAGCTTAAGTGCAGTTTCTGTGACAAAGTGTTCGCTAAAAACTTCGACCTGCAGCAGCACATCAGAAGTCACACGGGTGAGAAGCCGTTCCAGTGCATCGTATGCGGCCGAGCCTTCGCCCAGAAATCCAACGTGAAGAAGCACATGCAGACGCACAAGGTGTGGCCGGCCGGAGTGCACAGCACCGTGTCCAGACTCCCCGTCACGGTGAAACCAGTCCCGGAGAACACAGCTCAACATTCTGACGGACATGAAGAACACGGTAGCAACCATTCAGGAGTTCTGGATCAGAGCGAAGCTGAGCTCCCGTCCGAAGCGAAAGGATCCAACCACGCCCAAAACAAGCAGCTCATCCTGATCGACAGCTCGTACCAGTGCCAGTTCTGCGCCGCAAAATTCAGCAGCTACTTCCAGCTCAAATCCCACATGACCCAACACAAAGACGAGCAGgtgtacaggtgtgtggTGAAGGCGTGCTCTCAGACCTTCCAGAAGCTGGAGCTCTTCCTCGAGCACATCCGTTCTCACCAGGAGCAACTGACGTACCGCTGTCACCTGTGTACCAAAGTGTACCCATCTCTGTTCGAGCTCGGCCTGCACCAGTACTCACACAGCTTCTGTCCTCAGCAGAACACGCGCAAAGACACCGCCTACTACAGGTGTAATAAGTGTCAGAGTAAATACTCCACACAGGAAGCTCTGGAGCAACACATCCTCACCGCCTCACACAACTTCCCCTGTCCACACTGCCCCAAGgtTTTCCCATGCGAGCGATATTTCCGGAGACACCTGCTCACTCACGGTGCTGTTGGCAGATTCAAATGCCAGATCTGTAAAAAGCTGTTTAAAACGGAGCACTACCTCAAGctgcacacacagatacactcagGTGAGAAGCCGTATAAATGCTCAGTGTGTGAAGCCACGTTCAACCGCAAGGACAAGGTGAAGAGACACATGCTGATCCACGAACCCTTTAAGAAGTACAAGTGTCCTTTCAGgacgCATGTTGGCTGCACCAAAGAGTTCAACAGACCAGACAAGCTGAAGGCGCACATCCTGTCTCACTCAGgcaTTAAGCCGTTTAAGTGCCAGTTCTGCCAGAAGAGCTTCAGTCGCCGTGCTCACATGCTGGAGCACCAGCGCTCTCACACCAACAACTACCGTTTCCGCTGCTCCACCTGCGCCAAGGGCTTCACCCGCCTCAAATACTACCGCGAGCACCGCTGCCCACTGACCGCAGCCTCCGACACCACCACTGGAACAGCTGGAGgTGGAGAACCTACAGGCGGAGAAGCGGATTACACAGACGCTCCGGAGGAAGATGAAGACAATGAGGAAGAGACGAGTGAAGGCGGAGTTGTGGGAGCTGAAATGGGAACAGGAGCGGAGATGATGagaggaacaggaggaggaggaggaggaggagagtgaAGGTTTGCAGGGAGGTGGGGGGGCTGATGAACTGCTGGAGGAAACGGTGTTTGGCTCCACGGCTGATTGATGGCTCTGTTGAAGTCGTCTGGTTTAGTAGGAAATCCGGcagcacaaaacaaaaattgtattaaaatcaAAATCTCAGTTCGTTTCTCAGCTGGATTCTGCAGTATTTCCATAAAACAGAATGACAAATGGTGCTCAAATGCTCTGCTACGTTAACgtaagaatttaataaatattcttaCATAATTACAAAGAATCATGATCATAATTCTAAGACAAAAATCCTACAGCTATATTTATAAACCGGCAGAACAAGCGCATAGAGACAGAGCTGAGAAAGATGGACACTAACTGCTAACCTGTCTGGTGATGTGCTTTCACGTTATAAACTACTAGTTCAGACGTACCTTAAGTCTCTGTGGAGAAATTCCACACCATGCTAGTTTTAACTGTGGTTTAGGCCCGGCTTTACACCCTGACTTAGCAACGAACTCCTccatgtatttttgttttatattaaaacatcccgtgtttatttaatgttctcGTTGTAGAGAAATGTTGAGATgaattgctgctgtaacaacgaacagtgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgaacttgtgcactttacgacTGTAATCGGTCCAGCCCGGGTTCTGGGctaactgaaaataaattaaaccttGTGCATGACGAGA
>XM_026920166.2
CGCAGAAGAAGAAGACGCGGTTGCGCGGCGCTGCTGCTTGGCTACAGAGCTCCAGCCGTCATCATCCTCACCGTCATCATGTCGCAGGCGATATTTGAGGTGTTAGAAGGCATGGACAATCAGACCGTCCTCGCTGTGCAGTCCTTCCTGGATGGTCAAGCCGGCGTCCCTGATCACAGCAATCAGACCGTCTCGGGATCCGCCATCCAGCCAATGGatgaTGATGACATCTTCCTGTGTGGAAAGTGTAAGAAGCAGTTCAACTCGTTGCCGGCGTTCTTGACGCACAAGAGGGAGCAATGCCAGCAGAACACCCCCTCGCTCGCCACCGTGTCACTGGCGTCCAGCAACACCTACACACCTGTACCCTCAGTCAGCGCCGTGCCACAACCACCGGCCAACAGACAGGTGTCGACGTACATCACGGTGCCGCCgtctcctctcacacacaccctggtgCAGGGGAACGTTCTGGTGAGCGATGAGGTTCTCATGTCGGCCATCTCAGCGTTCACGTCCATGGACACGCCAGTCACGGCCATGCAGGCTTCttctcagAGCAATTTGAGCATGCCTAGTGCAACTTCATACCTGCAGCACCACCCACAGGCCTCCCAGCCCCTCCCACTGGCCCAAGCTCCACCCCTTTCTGCCCAGGTTCCCTCCAGTATCAACAGCTCAGTAGTGCAGGTGTACAGCACGCTGCCCCCGATGGCTGGAGGAGGAAACGCAGAGGTCCACACACTCGGCCTCCAACCATTTCAGTCTGTTCAgggTGGTGGTCAGTGTGTGGACAGTCAGAGTGCAGCATTCAGCAGCGCTCCTGTCTACAGTTCGGCTAAACCAGCACAGAAGCCGAAGAGCTGCAGCAGCACCGTGGCTCTGAATGAGCTGAGCGAATACGACAAGGTCATCATCCCCAAAAAGACCCGCAACTCCAAGAAAGGACACGAAGGTCAAACAAAAGCCAAAGGTCAGAAGCTTAAGTGCAGTTTCTGTGACAAAGTGTTCGCTAAAAACTTCGACCTGCAGCAGCACATCAGAAGTCACACGGGTGAGAAGCCGTTCCAGTGCATCGTATGCGGCCGAGCCTTCGCCCAGAAATCCAACGTGAAGAAGCACATGCAGACGCACAAGGTGTGGCCGGCCGGAGTGCACAGCACCGTGTCCAGACTCCCCGTCACGGTGAAACCAGTCCCGGAGAACACAGCTCAACATTCTGACGGACATGAAGAACACGGAGTTCTGGATCAGAGCGAAGCTGAGCTCCCGTCCGAAGCGAAAGGATCCAACCACGCCCAAAACAAGCAGCTCATCCTGATCGACAGCTCGTACCAGTGCCAGTTCTGCGCCGCAAAATTCAGCAGCTACTTCCAGCTCAAATCCCACATGACCCAACACAAAGACGAGCAGgtgtacaggtgtgtggTGAAGGCGTGCTCTCAGACCTTCCAGAAGCTGGAGCTCTTCCTCGAGCACATCCGTTCTCACCAGGAGCAACTGACGTACCGCTGTCACCTGTGTACCAAAGTGTACCCATCTCTGTTCGAGCTCGGCCTGCACCAGTACTCACACAGCTTCTGTCCTCAGCAGAACACGCGCAAAGACACCGCCTACTACAGGTGTAATAAGTGTCAGAGTAAATACTCCACACAGGAAGCTCTGGAGCAACACATCCTCACCGCCTCACACAACTTCCCCTGTCCACACTGCCCCAAGgtTTTCCCATGCGAGCGATATTTCCGGAGACACCTGCTCACTCACGGTGCTGTTGGCAGATTCAAATGCCAGATCTGTAAAAAGCTGTTTAAAACGGAGCACTACCTCAAGctgcacacacagatacactcagGTGAGAAGCCGTATAAATGCTCAGTGTGTGAAGCCACGTTCAACCGCAAGGACAAGGTGAAGAGACACATGCTGATCCACGAACCCTTTAAGAAGTACAAGTGTCCTTTCAGgacgCATGTTGGCTGCACCAAAGAGTTCAACAGACCAGACAAGCTGAAGGCGCACATCCTGTCTCACTCAGgcaTTAAGCCGTTTAAGTGCCAGTTCTGCCAGAAGAGCTTCAGTCGCCGTGCTCACATGCTGGAGCACCAGCGCTCTCACACCAACAACTACCGTTTCCGCTGCTCCACCTGCGCCAAGGGCTTCACCCGCCTCAAATACTACCGCGAGCACCGCTGCCCACTGACCGCAGCCTCCGACACCACCACTGGAACAGCTGGAGgTGGAGAACCTACAGGCGGAGAAGCGGATTACACAGACGCTCCGGAGGAAGATGAAGACAATGAGGAAGAGACGAGTGAAGGCGGAGTTGTGGGAGCTGAAATGGGAACAGGAGCGGAGATGATGagaggaacaggaggaggaggaggaggaggagagtgaAGGTTTGCAGGGAGGTGGGGGGGCTGATGAACTGCTGGAGGAAACGGTGTTTGGCTCCACGGCTGATTGATGGCTCTGTTGAAGTCGTCTGGTTTAGTAGGAAATCCGGcagcacaaaacaaaaattgtattaaaatcaAAATCTCAGTTCGTTTCTCAGCTGGATTCTGCAGTATTTCCATAAAACAGAATGACAAATGGTGCTCAAATGCTCTGCTACGTTAACgtaagaatttaataaatattcttaCATAATTACAAAGAATCATGATCATAATTCTAAGACAAAAATCCTACAGCTATATTTATAAACCGGCAGAACAAGCGCATAGAGACAGAGCTGAGAAAGATGGACACTAACTGCTAACCTGTCTGGTGATGTGCTTTCACGTTATAAACTACTAGTTCAGACGTACCTTAAGTCTCTGTGGAGAAATTCCACACCATGCTAGTTTTAACTGTGGTTTAGGCCCGGCTTTACACCCTGACTTAGCAACGAACTCCTccatgtatttttgttttatattaaaacatcccgtgtttatttaatgttctcGTTGTAGAGAAATGTTGAGATgaattgctgctgtaacaacgaacagtgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgaacttgtgcactttacgacTGTAATCGGTCCAGCCCGGGTTCTGGGctaactgaaaataaattaaaccttGTGCATGACGAGA

Function

symbol description
znf341 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Human ortholog(s) of this gene implicated in hyper IgE recurrent infection syndrome 3. Orthologous to human ZNF341 (zinc finger protein 341).

NR:

description
zinc finger protein 341-like

GO: NA

KEGG:

id description
K24852 ZNF341; zinc finger protein 341

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920165.2 True 3132 mRNA 0.52 16 23319361 23331266
XM_026920166.2 False 3117 mRNA 0.52 16 23319361 23331266

Neighbor

gene id symbol gene type direction distance location
tti1 tti1 coding upstream 124106 23186491 ~ 23195255 (+)
tgm2a tgm2 coding upstream 140038 23172257 ~ 23179323 (+)
si:dkey-65j6.2 kiaa1755 coding upstream 147610 23152604 ~ 23171751 (+)
myl9a LOC108276062,LOC103022187,LOC108439470,LOC107737046,LOC107653232,LOC107569439 coding upstream 307900 23006566 ~ 23011461 (+)
scube3 scube3,LOC108276393,LOC108439473,LOC106566910 coding upstream 367431 22859162 ~ 22951930 (+)
LOC113530556 NA coding downstream 76543 23407809 ~ 23411399 (+)
LOC113530872 NA coding downstream 83551 23414817 ~ 23421228 (+)
LOC113530918 NA coding downstream 90928 23422194 ~ 23433656 (+)
LOC113530555 NA coding downstream 109230 23440496 ~ 23443625 (+)
LOC113530919 NA coding downstream 116363 23447629 ~ 23450712 (+)
G259962 NA non-coding upstream 10769 23307755 ~ 23308592 (+)
G259690 ctnnbl1,LOC106942865 non-coding upstream 41452 23277434 ~ 23277909 (+)
G259540 LOC108276061 non-coding upstream 254792 23026446 ~ 23064569 (+)
G259539 NA non-coding upstream 296913 23021970 ~ 23022448 (+)
G259536 NA non-coding upstream 303465 23013384 ~ 23015896 (+)
G259968 NA non-coding downstream 1414 23332680 ~ 23348937 (+)
G259978 NA non-coding downstream 13596 23344862 ~ 23362290 (+)
G260009 NA non-coding downstream 137560 23468826 ~ 23469057 (+)
G260011 NA non-coding downstream 142647 23473913 ~ 23474444 (+)
G260074 NA non-coding downstream 196162 23527428 ~ 23562384 (+)
LOC113530514 LOC108275916 other upstream 638819 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 1776934 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 2080362 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 2411902 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 2805166 20510244 ~ 20514195 (+)
LOC117599309 NA other downstream 40478 23371744 ~ 23383653 (+)
G259993 NA other downstream 56272 23387538 ~ 23389314 (+)
G260415 NA other downstream 700961 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 937311 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 1069318 24400584 ~ 24453538 (+)

Expression


Co-expression Network