zgc:158263 (LOC108276042,LOC108441406)


Basic Information

Item Value
gene id zgc:158263
gene name LOC108276042,LOC108441406
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19784571 ~ 19794997 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920800.2
GTATGATAATTGCAGGCCAGAGCGACAGGTGTGCGAGGAATCAGGGAAGCGCGAGGAAGTTTTTTTTAGACGCTAGTTTTAAGAGTTTGACAGCGAGGATTGCGATAAGAGGAAACAACTGAGACACAATACCGATTATATCTTCTGTAGTAACCTGTTTTTAAATGAGATATTGACACAGTGGTATCTCGAGTTGATGGTAGGTCATATTGGGTCTGTTTTTTCCGCTCACGAGCCAGGTGTTCATTTCAAACCAGCGCGCAGTGACAGAAATGAAATGCTCGTTAGCTCGCGCACACCGTGGAACAAAATGTCAGCGTTAAAGCGAGAAAACAAACGTGTAATAGGTGAAtaaggttgtttttttaaagtgattagGTTGCTGTTGGAGGTTTATGAGGTAGTTGAGGTGATGGAGACAGACTCGGTGAGGTTGGAGTCGAGTGTGTGGATCGGAAATAAGCGGCAGCGCGCGCTGCTCAGTGGATGGCGCTTCAGCTGGACCGAGCTGGACAAGAAGAACCGAGACAAAGACACTAttTCAGTGCCCATCTCTGAGGTGGTTGCAGTAATGGAGGGTCAGGTGGAGATCCAGCCACAGAAGAAAGTGGAGGACACTGACCGAGACTTCACATTGTTCTATATAAAGCGGAGTAAAACCAGTGGTGGGAAGGGGCCACTGTGGAGCCTGGGCAGGTCCCAGTTCTGTTGCCCCAGCCGTGACCTCAGGGATCAGTGGGTGACCCAACTCAGAATTGCACTTACAACACACTGTCCCTCTCGCCCTCACAGGTTGTTAGTGTTCATTAACCCCTATGGAGGGAAGAAAAAAGGGAAGCAAATCTATCACTCCTCAGTGGCTCCTCTATTTGAGCTGGCTGGCATCAGCTCTCATGTTGTGGTGACTGAACGAGCCAATCAGGCGAGAGACCATATCCTGAAGAAAGATCTGACTGGGTTTGACGGTGTGATTGGTGTGGGCGGAGATGGAATGTTCAGTGAGCTGTTGCATGGCGTGATTGGACGAACCCAGCAGGAGGCAGGTGTTTCAGAACATGACCCGTCTGTGATGCTGCAGCCATGTGACCTCCACATCGGCATCATTCCAGCAGGCTCCAcagattgtgtttgttttgctacAGTAGGTGTGAATGACCCGGTTACATCAGCACTGCACATCATTATCGGAGACTCTCAGCCTCTGGATGTGTGTTCTGTCCATCATCATTCCACACTGGTGCGTTATTCTGTGTCACTGGTGGGCTACGGTTTCTATGGTGACGTGTTGGCTGAAAGTGAGAGGCACCGCTGGATGGGACCTCTCAGATATGACTACTCGGGTTGTTTAGTGTACCTGTGCAACAGGAGCTATCAGGGAATAGTGCAGTATCTACCTGCAGACTCCCAGATCACCAGCCCCAGAGACAACAGTCGCTGCCTCTCAGGgTGCAGAGTATGCTCGGAGAGCACCGAGAGACTGTTCCCTCACTCAGACAGCTGCAGTTCTCTGTACAGCAGGCAACTCAGCCAGTACAGCATTGAGTCAGAGGGTGAGTGGTTAAGTGTTGAGGGCAAATTTAGGTGCGTGTCCCTCACCTGCATGTCCAGCTCGTGCCCACGGAGCCCCAAAGGCCTCTCACCCTCAGCACACCTGGCTGATGGGACAGGAGACCTCATCCTGGTGAGGAACACTAATCCCCTGGGTTTCCTCACGTACCTGCACAGACACACCACCACGCAGGATCAGTTTGACCTGCCCTTCGTCGAGGTGCACCGCGTCAAAGCAGCACGCTTTTCTTTTACTCCCAGTGAGGAGGAGGACGATGAAGACAAGCCAAAAGAAAGGCAAAACATCACGGCAGGTATACTGGGGGATCCTGAGATGCTGTGTGAAGGCGACGTTGAGTCCGGCAGGCTCGGCTCCCGGCAATGCCTTGCAGGAAAGCAGAGCGAACAAGGGATGaaggagaaaggaaagaagacaGATTATCTTTGTGGACTGTGCTCCAGTAAGCGgtctgctgtgtctgtgtggaacTGTGATGGAGAGATTCTGCCGTATACTGAAATCTTATGCAGaatACACGGTCAGCTGGTGCGTTTGTTTGCAAGGGGCATTGAAGAGGACACAAGCTCCCAGAAATACCGTGAGGGAAGCAGGAATTGCAAAGGGAGAtgttttttacacaattaatatTAACCAtaaaaattctataaataagaaatataatgaatTTCATATTTAAGTTATAAAGTACAGTAGAATATTGCAATAAACATAAGCACATGGTT

Function

NR:

description
ceramide kinase-like isoform X1

GO:

id name namespace
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0008152 metabolic process biological_process
GO:0003951 NAD+ kinase activity molecular_function
GO:0004143 diacylglycerol kinase activity molecular_function

KEGG:

id description
K04715 CERK; ceramide kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920800.2 True 2292 mRNA 0.49 13 19784571 19794997

Neighbor

gene id symbol gene type direction distance location
ptpn22 NA coding upstream 319235 19439436 ~ 19465336 (+)
atp6ap1b LOC108275744 coding upstream 452597 19322799 ~ 19331974 (+)
itih6 itih6 coding upstream 474737 19295519 ~ 19309834 (+)
pfkfb1 pfkfb1,LOC108276267,LOC108425577,LOC107574688,LOC107673088 coding upstream 490370 19283497 ~ 19294201 (+)
si:dkey-78k11.9 NA coding upstream 508818 19273287 ~ 19275753 (+)
zbtb48 zbtb48,LOC102780700 coding downstream 44714 19839711 ~ 19848662 (+)
syt6a syt6,syt6a,LOC108433426,LOC107673111,LOC107591076,LOC107593918 coding downstream 105017 19900014 ~ 19965413 (+)
sdf4 sdf4,LOC107591077,LOC107673072,LOC107716138,LOC107687443 coding downstream 242424 20037421 ~ 20043667 (+)
ccnt1 ccnt1,ccnt2,LOC102787965 coding downstream 324953 20119950 ~ 20127658 (+)
pmelb LOC108275940 coding downstream 334709 20129706 ~ 20138298 (+)
G257713 NA non-coding upstream 38625 19743485 ~ 19745946 (+)
G257710 NA non-coding upstream 49358 19733351 ~ 19735213 (+)
G257671 NA non-coding upstream 117986 19660638 ~ 19666585 (+)
G257623 NA non-coding upstream 302996 19481110 ~ 19481575 (+)
G257608 LOC108276210 non-coding upstream 313653 19466692 ~ 19470918 (+)
G257781 NA non-coding downstream 212955 20007952 ~ 20008154 (+)
G257774 NA non-coding downstream 213642 20008639 ~ 20010104 (+)
LOC113530699 NA non-coding downstream 263254 20058251 ~ 20070248 (+)
G257813 NA non-coding downstream 270480 20065477 ~ 20066008 (+)
G257814 NA non-coding downstream 304233 20099230 ~ 20099498 (+)
si:ch73-206d17.1 LOC108275771 other upstream 79508 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 305676 19478302 ~ 19478895 (+)
pkig NA other upstream 562012 19198426 ~ 19222559 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other upstream 850252 18879481 ~ 18934319 (+)
LOC113530386 slc26a9 other upstream 2596194 17175701 ~ 17188377 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 595812 20390809 ~ 20398714 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other downstream 715247 20510244 ~ 20514195 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 1108108 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 1433323 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 1743048 21538045 ~ 21542427 (+)

Expression


Co-expression Network