LOC113530777 (LOC108276216)


Basic Information

Item Value
gene id LOC113530777
gene name LOC108276216
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20883692 ~ 20886509 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921092.2
GTATTTCCGAGTGTGACTTATAAACCAGAGGCTGGGGGGAGAACATTTGCTTCATGACTTCCTGTCTTCATGTTTTTTATGTTCAGTGAGAACCACAGAGGTGAAAGAAAGTTTTCCACTAGTGTCTGAGTGAGACGGTTGACGAGACTGACGGAAAAAAGGCCCATGTCTGGAGATCGCGTTATCAAGgactgatttacacaaaaaCTCAAAAAGACGTGaaatcagaaaaaCTTCCAAAGATGAACACTTCCAACAACATCTCATGCGATGCCGAGTTGACTGCTGATTTCCAGTTCTACCTCTTCCCCATCACCTACATCCTCGTGATGGTGTTCGGTCTGCTGGGGAATCTGGGAGCCCTTTACATCTTCATCTTCAAAACAGAGCATAAGTCCCCCTCGAGCATTTACATCATCAGCCTCGCAGTGGCTGACACTATTTTCCTGTGTGTCCTTCCCTTCCGCATTCACTACCACCTCAATGGCAACAACTGGACCTTCGGGAATGTGGCGTGTCGTATGACGGGTACGGTCTTCTTCGCCAATGTCTACATCAGCATCGCCTTCATGAGCTGCATCTGCGTGGACCGCTACCTGGCCACCGCGCATCCCCACATGTACCTGCGTCTCCGTAACACACGCTGCGCTGGAGCCGTGTCCACCTTCATCTGGGTGTTTGGAGGGGCAGCAATTTTAGCCTTCATGTTCACGTCTCCAGATAGCCACACCACCAATGGGCGGACAAGCTGCTTCGAGAATTTTTCAGAGAGTGACTGGAAGACAAATCTGGTTCTGTACAGCGCCTTAAGCCTGGTATTTGGCGCCTTGTTTCCCTCAATCATCATCCTGGTGCTCTACCCGGTGGTGGCGCGTCGGATCGCGCAAATCAAGACGCGAACAGCGCGCGGTGCCCTGAGGATCATCTACACCATCCTGGCCATCACAGTCCTCTGCTTCTTGCCCTACCACCTAGTGTACTTGCTGCACCTGCTGCTGCGAACTCAGGTCATCCATAACTGCTTGCTAGCTGATGGTATCTACAAAGCAAGGCGTGTTACCATGGCGCTGGTCAGCATGAACAGCCTACTCGACCCTGTGCTTTATTACTTCGCCACCAGCCACTGCAAGTTGAACTGCAAATGGAACTTCAAGCGGCTGAAGCCAAGGAAGAAAAGAGACGTCTATGCCATCTCAGAGAGGTTACAAGCTCATTGAAGAAACAAACTCCATTTATCGAGATTTCTAAGAATAAACAATGACAAAGAAATGAACAGGAGAAGATGAGGGGCATCTATGTGACATAAAGCTTAGGAGTGCATTGGAAGGATTTTTTCTGGTGAAATATTCTACTGGGGTTACTGTTTTAAATGATAACCTAATCTTAATTgactataaaacacacacacacacacacacacacacacacacacacaagctggtgGTGAAAATTTAAGGAAAAATTAATTATGAAACCTCTCTTGTATatatagaacaaaaaaaaaagaaacaaaagatcAAATCCAGTGACTTTTCCATGAAATTTCATACACTGTCAGTAGTTATCATGTTGTTATACGctgaagagagagtgtgtgaaaggaaaggaaaaaattTAAACAGAGCGCACTGTGCGGCGCTGCTTAGCCAAAAATAGTTTTTTGGTTTAATGGTTTACGTCTGGTCAGCCATGTTGTGGTCTTCTGTGTTTGAGAGCCATCGCCATTGGGTATGCTACAGTTATAAACATGCTAGCAGCGGCAGCAGAGATAGCAAGGTGCTCTGGATGATTTCTGTCCAGGGGAAGGGTTGTGAAATCCAGCCGATGTTTCTGAGGCATTATAGCCAGACACAAATGGGATGAGAACCACTGGAGTTAAGAACTTGACTGGGTAAATGGCAAGAGATGGAAATGCATTTCAATCAGAAGTCAATCAGAAAAAGTCAGCGGTGAGGTAACCATCCAATCATACTGTGACGAACCACTGAAACTGTGACACTGTAACAACTCTATCtacaaccatgcaaatctcaccGAATGGTAGACAGGACTTCATTTAATGAGGGGTTTCAATTCCAAAACGGCAGCTGGACTGCAGGAAAGGAAAAGAGTTTATTCCTCAATGGAAACATTTATGCTAGTCAAAGAAAAGGAAACGTTATGCATGATAACAGAACTGAAaagatgttgttgtttttttagacAGAGGAATCCACCATGCAATCTTAAGATTTTAATTAGAAACATTTTATCTGATTTTAATTCCCAAGCACTGACGTtgtgtataaaatgaaatggtGGAATTCTTGTTTATCTAGAAACTTTGTTTGATCCAATCTTTGTgggtgtaaaataaaaatgtattgtatgcTGTGGCTAAA
>XM_034312195.1
TGCAGCACATCCGATTGCACCCTGTCAGCTCTACAACTGACCACAAAACCAAGCCCATACAGAGCTATAGACACAAAACAGgTGAGAACCACAGAGGTGAAAGAAAGTTTTCCACTAGTGTCTGAGTGAGACGGTTGACGAGACTGACGGAAAAAAGGCCCATGTCTGGAGATCGCGTTATCAAGgactgatttacacaaaaaCTCAAAAAGACGTGaaatcagaaaaaCTTCCAAAGATGAACACTTCCAACAACATCTCATGCGATGCCGAGTTGACTGCTGATTTCCAGTTCTACCTCTTCCCCATCACCTACATCCTCGTGATGGTGTTCGGTCTGCTGGGGAATCTGGGAGCCCTTTACATCTTCATCTTCAAAACAGAGCATAAGTCCCCCTCGAGCATTTACATCATCAGCCTCGCAGTGGCTGACACTATTTTCCTGTGTGTCCTTCCCTTCCGCATTCACTACCACCTCAATGGCAACAACTGGACCTTCGGGAATGTGGCGTGTCGTATGACGGGTACGGTCTTCTTCGCCAATGTCTACATCAGCATCGCCTTCATGAGCTGCATCTGCGTGGACCGCTACCTGGCCACCGCGCATCCCCACATGTACCTGCGTCTCCGTAACACACGCTGCGCTGGAGCCGTGTCCACCTTCATCTGGGTGTTTGGAGGGGCAGCAATTTTAGCCTTCATGTTCACGTCTCCAGATAGCCACACCACCAATGGGCGGACAAGCTGCTTCGAGAATTTTTCAGAGAGTGACTGGAAGACAAATCTGGTTCTGTACAGCGCCTTAAGCCTGGTATTTGGCGCCTTGTTTCCCTCAATCATCATCCTGGTGCTCTACCCGGTGGTGGCGCGTCGGATCGCGCAAATCAAGACGCGAACAGCGCGCGGTGCCCTGAGGATCATCTACACCATCCTGGCCATCACAGTCCTCTGCTTCTTGCCCTACCACCTAGTGTACTTGCTGCACCTGCTGCTGCGAACTCAGGTCATCCATAACTGCTTGCTAGCTGATGGTATCTACAAAGCAAGGCGTGTTACCATGGCGCTGGTCAGCATGAACAGCCTACTCGACCCTGTGCTTTATTACTTCGCCACCAGCCACTGCAAGTTGAACTGCAAATGGAACTTCAAGCGGCTGAAGCCAAGGAAGAAAAGAGACGTCTATGCCATCTCAGAGAGGTTACAAGCTCATTGAAGAAACAAACTCCATTTATCGAGATTTCTAAGAATAAACAATGACAAAGAAATGAACAGGAGAAGATGAGGGGCATCTATGTGACATAAAGCTTAGGAGTGCATTGGAAGGATTTTTTCTGGTGAAATATTCTACTGGGGTTACTGTTTTAAATGATAACCTAATCTTAATTgactataaaacacacacacacacacacacacacacacacacacacaagctggtgGTGAAAATTTAAGGAAAAATTAATTATGAAACCTCTCTTGTATatatagaacaaaaaaaaaagaaacaaaagatcAAATCCAGTGACTTTTCCATGAAATTTCATACACTGTCAGTAGTTATCATGTTGTTATACGctgaagagagagtgtgtgaaaggaaaggaaaaaattTAAACAGAGCGCACTGTGCGGCGCTGCTTAGCCAAAAATAGTTTTTTGGTTTAATGGTTTACGTCTGGTCAGCCATGTTGTGGTCTTCTGTGTTTGAGAGCCATCGCCATTGGGTATGCTACAGTTATAAACATGCTAGCAGCGGCAGCAGAGATAGCAAGGTGCTCTGGATGATTTCTGTCCAGGGGAAGGGTTGTGAAATCCAGCCGATGTTTCTGAGGCATTATAGCCAGACACAAATGGGATGAGAACCACTGGAGTTAAGAACTTGACTGGGTAAATGGCAAGAGATGGAAATGCATTTCAATCAGAAGTCAATCAGAAAAAGTCAGCGGTGAGGTAACCATCCAATCATACTGTGACGAACCACTGAAACTGTGACACTGTAACAACTCTATCtacaaccatgcaaatctcaccGAATGGTAGACAGGACTTCATTTAATGAGGGGTTTCAATTCCAAAACGGCAGCTGGACTGCAGGAAAGGAAAAGAGTTTATTCCTCAATGGAAACATTTATGCTAGTCAAAGAAAAGGAAACGTTATGCATGATAACAGAACTGAAaagatgttgttgtttttttagacAGAGGAATCCACCATGCAATCTTAAGATTTTAATTAGAAACATTTTATCTGATTTTAATTCCCAAGCACTGACGTtgtgtataaaatgaaatggtGGAATTCTTGTTTATCTAGAAACTTTGTTTGATCCAATCTTTGTgggtgtaaaataaaaatgtattgtatgcTGTGGCTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921092.2 True 2381 mRNA 0.44 2 20883864 20886509
XM_034312195.1 False 2377 mRNA 0.44 3 20883692 20886509

Neighbor

gene id symbol gene type direction distance location
march9 march9,LOC107593952,LOC107599679 coding upstream 131821 20737744 ~ 20751871 (+)
tspan31 tsn31,tspan31,LOC107599072,LOC107593953,LOC108433386 coding upstream 153759 20719865 ~ 20729933 (+)
LOC113530407 gpr182,LOC108275868 coding upstream 192078 20689186 ~ 20691614 (+)
LOC113530755 gpr182,LOC108275868 coding upstream 196914 20684365 ~ 20686778 (+)
pip4k2ca pip4k2c,pip4k2ca,LOC107598997,LOC107714989,LOC107664235,LOC107697923,LOC107593957 coding upstream 203622 20668113 ~ 20680070 (+)
cptp cptp,LOC108433359,LOC107697856,LOC107599683,LOC107706969,LOC107664144,LOC107594044 coding downstream 13613 20900122 ~ 20902771 (+)
vwa5b1 vwa5b1,LOC107599492 coding downstream 32579 20919088 ~ 20953971 (+)
fam43b fam43b coding downstream 111160 20997669 ~ 20999732 (+)
LOC113530567 LOC108275599 coding downstream 166161 21052670 ~ 21056506 (+)
cdaa cda coding downstream 173267 21059776 ~ 21062377 (+)
G258362 NA non-coding upstream 93547 20786242 ~ 20790145 (+)
G258275 LOC108276173 non-coding upstream 127154 20682370 ~ 20756538 (+)
LOC117599266 NA non-coding upstream 171734 20708115 ~ 20711958 (+)
LOC117599265 NA non-coding upstream 184024 20696985 ~ 20699668 (+)
G258273 NA non-coding upstream 202754 20663682 ~ 20680938 (+)
LOC117599282 NA non-coding downstream 22307 20908816 ~ 20911082 (+)
G258439 NA non-coding downstream 89389 20975898 ~ 20976359 (+)
G258460 NA non-coding downstream 198873 21085382 ~ 21088222 (+)
G258476 selenoi,si:ch211-197l9.4,LOC107549067 non-coding downstream 206820 21093329 ~ 21093844 (+)
G258483 iyd non-coding downstream 217205 21103714 ~ 21105101 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 369497 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 484978 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1178629 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1404797 19478302 ~ 19478895 (+)
pkig NA other upstream 1661133 19198426 ~ 19222559 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 16596 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 341811 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 651536 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1784889 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2485235 23371744 ~ 23383653 (+)

Expression


Co-expression Network