cdaa (cda)


Basic Information

Item Value
gene id cdaa
gene name cda
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21059776 ~ 21062377 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921161.2
acgcacacacgtatatgtccacacacacacactttcacactttcagTTGTGCCTGGAGTGCGCTGGAGCAGGAACAATCTCACTGGATACTTTCACTGGATGTCATTATAATGGCTAAAATCACCAGCAGTCTACAAGATTTAATTCTCACATCTCAGGAAGCGAAACAGTTTGCCTACTCTCCGTACAGCAAGTTCAGGGTAGGAGCAGCTCTACTCACACACGATGGAAGAGTCTTTACCGGATGTAATGTAGAAAACGCTTGCCTCGCTCTTGGCGTCTGTGCTGAGAGGGTTGCCATCTCCAAAGCTGTGTCAGAGGGACATCGAGAGTTCAAGGCCATTGCTATAGCCAGTGACATGGAGGATAATTTTATCTCACCGTGTGGTGGCTGCAGACAGTTCATGAGGGAgtttGGCCTGCAGTGGGAAGTTTATTTGTCAAAACCAAATGGCTCTTTCATAAAGATGACTGTAGAGCAGCTCCTTCCTGCCTCATTTGGTCCTGAAGACTTGCAGAAGTGAAAAGTGATTCCCACTAAGAAGAGACATTAGATTATTTGACTGAATGAATATGCTGGCACTTGAGAATGAAAATGTTGACTGTATGTAGGCTTATATGTCATCTTATTATTTATAAGATTAATGTTCGCAGAAATGTATAAACACTGATGTAACTGCTCAGTGGTActtaaataaaggaaatattATTTAA

Function

symbol description
cda Enables several functions, including cytidine deaminase activity; protein homodimerization activity; and zinc ion binding activity. Involved in cytidine deamination; negative regulation of cell growth; and negative regulation of nucleotide metabolic process. Located in cytosol. Implicated in lung non-small cell carcinoma.

GO:

id name namespace
GO:0009972 cytidine deamination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004126 cytidine deaminase activity molecular_function

KEGG:

id description
K01489 cdd, CDA; cytidine deaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921161.2 True 714 mRNA 0.42 4 21059776 21062377

Neighbor

gene id symbol gene type direction distance location
LOC113530567 LOC108275599 coding upstream 3270 21052670 ~ 21056506 (+)
fam43b fam43b coding upstream 60044 20997669 ~ 20999732 (+)
vwa5b1 vwa5b1,LOC107599492 coding upstream 105805 20919088 ~ 20953971 (+)
cptp cptp,LOC108433359,LOC107697856,LOC107599683,LOC107706969,LOC107664144,LOC107594044 coding upstream 157005 20900122 ~ 20902771 (+)
LOC113530777 LOC108276216 coding upstream 173267 20883692 ~ 20886509 (+)
pink1 pink1 coding downstream 718 21063095 ~ 21067217 (+)
agmat agmat,LOC102790280,LOC105912720 coding downstream 5796 21068173 ~ 21073057 (+)
si:ch73-217b7.1 map7 coding downstream 75848 21138225 ~ 21171926 (+)
LOC113530738 si:ch73-290k24.6,LOC108275467,LOC106608414,LOC107396729,LOC106510918 coding downstream 140113 21202490 ~ 21212264 (+)
egr4 LOC108275472,LOC107734701 coding downstream 162964 21225341 ~ 21227743 (+)
G258439 NA non-coding upstream 83417 20975898 ~ 20976359 (+)
LOC117599282 NA non-coding upstream 148694 20908816 ~ 20911082 (+)
G258362 NA non-coding upstream 269631 20786242 ~ 20790145 (+)
LOC117599266 NA non-coding upstream 347818 20708115 ~ 20711958 (+)
LOC117599265 NA non-coding upstream 360108 20696985 ~ 20699668 (+)
G258460 NA non-coding downstream 23005 21085382 ~ 21088222 (+)
G258476 selenoi,si:ch211-197l9.4,LOC107549067 non-coding downstream 30952 21093329 ~ 21093844 (+)
G258483 iyd non-coding downstream 41337 21103714 ~ 21105101 (+)
G258462 NA non-coding downstream 44970 21107347 ~ 21108015 (+)
G258459 ppp1r14c,LOC107697847,LOC107738512,LOC107664259 non-coding downstream 52673 21115050 ~ 21132053 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 152317 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 545581 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 661062 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1354713 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1580881 19478302 ~ 19478895 (+)
si:ch73-290k24.5 LOC108275473 other downstream 165943 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 475668 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1609021 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2309367 23371744 ~ 23383653 (+)
G259993 NA other downstream 2325161 23387538 ~ 23389314 (+)

Expression


Co-expression Network