calcrl2 (LOC108276023)


Basic Information

Item Value
gene id calcrl2
gene name LOC108276023
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21323924 ~ 21352016 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921199.2
GGGCACATCAGCGCGCGCTCCCACGGAGCACACTCGCAGCCTCAGCAAGCCGCCCTTGCAACATGTTAATGAGGAGAGGATATAAGAGGAGCAACCGCTAAACATCTCGTTTTTACGGGTACTGATGTGCTGTTGCGCCCCCTTTCAGTGCCTCCTGTAGTGCATCATGGGAAAACACCCAACATTCCTACTGCTGCTTCTACAGATGCTCaccactgagTTGTGTCAGGCCGAGGATGTGATAGCGACGACTATGATACCAAAGGAGGAAGTGACTGATATCCCAATATCCCCTACTGCTCTGAGGGTGTCGAGGGAACAGATCTTGGCAGCTCAGTTTGAGTGTTACCTCAAAATACTGCACGACCCACCACACACAGATCcagGGCCGTACTGTAACCGCACGTGGGACGGCTGGCTGTGCTGGGGAGACTCGGCTCCGGGAACCGCCATGCAGGACTGTCCTACTTATTTCCAAGACTTTGACCCAGCAGAGAAAGTAACCAAAGTGTGTAACCCAGATGGACAGTGGTTCCGACATCCTGACAGCAACCGACTGTGGTCCAACTACACCCTGTGCTCAGCCTACACCAAAGGAAAAGTCACGGTTGCATTCACCATGTATTATCTGGCAGTGCTGGGTCACACGCTGTCTGTGGTCTCCCTGCTTATATCCATTTTCATCTTCTCATATTTCAAGTGTCTAAGCTGCCAGAGGATCTCTCTCCATAAGAACATGTTCCTGTCCTTCATCTTCAACTCCATTCTCATGGTCATCTGGTTAACGATGATCTTCCACGATGAGCAGCTGGCTTCCACCAACCAAATTGGCTGTAAGATCTTGTCCAGTCTGATTCATTATGCATCATGCTCGACGTACTTCTGGATGCTGTGTGAGGGGATCTACTTGCACACACTTATCATCGTGGCTGTGTTTGTGGGAGAACAGCAGCTGGGCTGGTATTACCTGCTGGGCTGGGgaTTCCCAATTATTCCAGCTGTCATTCACGCTGTGGCCCGTCTGTACTTCTATGATGACAATTGCTGGATAAGCAACTCTGACCTGCTCTACATCGTCCATGGCCCAATCCACGTTGCCCTGGTGGTGAACCTCTTCTTCCTGTTGAACATAGTGCGTGTTCTGATCACAAAGCTGAAAGAGACCCACAGGACCGAATCCAATGCCTACATGAAGGCTGTGCGTGCCACCCTCATCCTGGTGCCCCTGATGGGCGCTCACTTCATCCTGGTGCCCCTGCAGCCCGAGGGCAGACTGCCCTTGGCCGTCTATGAGTTCTTCATGAATGTCTTCATGCATTTTCAGGGCCTCCTGGTTGCCATCATCTTATGTTTTGGAAATGGAGAGGTGCACTCAGCTATAAGGCGTAAGCTTGCCCAGTACCGGGTCCAATGCCGGCAGCGCCTGGTGACGACTGACTCTCACTCTCAGAACTATCACACCAACTCCTCGATCGGTGAGACCAGCCGAATGACCCTGAGTCTGGAACATGCGCCACCCCAGGTGGATGAGGACAAAATACACACAGCCATGTTCGTCCTCAATGGCCAGAGCAACGGCAAGCGCAGTTTCAGTGAGGAAGATCACAAAGTCAAAGTCCTGGGGTCGTCAATGATCTGACACTAAAAGGGAAAGAGACTTCTTTAAATCTTCGATACTAAGCTCTTTTAAAGAAACATGTCACCCTGAATGTGAACagtggtcaaaaatgaaaaaaaggtgGTTAGTATAATTTGCTTTATGCTAACTGAtccaaatttttatttaacgGGCGTCCTTCGTTCATCTATTTCACAACACTGTAAGAAAGGAAAGTGAATGTTTAAAGCAACGACTAAAAGTCTGGCAGAGCTCCAGAGTGATGTCTAAAATTTTGCCCTTTTCGTCGGGAGATCACGAGTTTGAATGTCGAAGATGCCATAGCAGTCTGGGAACCCAAGCGAGAGTTGAACTTTGGGTGGGAaagttagttttttttcctttctgtcctTTAGTGTGACTCTAGCCAATCAGAATAGGACATTTAGCACCCTCCTCAACATGTGAAGCAGTTTAGGAAGAAGCATGTAACCTTtatcaggggtggacaaatcagtagaacaaagctttttattcctaGTTGCCCCACAGACAAGTAGAGATAAAGAAAAGCAATCTGTGTCCTATTGACTTCcgcaaaaaacaaatattatcatttggtatgtagctatgtttaaatgTGGCACACATCAATGCTTTAACTATAGCGCAAATTACTTGTTCCGAATGCCACCATCTGCTGCACtacaaacattttccaaaatggCTTATCGTAGTCAGATTCAAGGCACTGCTACACATTTTTATAGTACAGGCAGATCTCATGGATTCCAGGCAGAATGTACATgcaacattagctagctagctaatgtgtttgttagctagctaattattaAGTGGCCACTGCTTACTTATAAGtagttcctccattttttacTAACCAAAGAGATTCAACGTTGTTTCTTAGATTTGAGATTGAAGATTGAGGCTTGTCAATTCGACAACATGAACAAGTTTTATTCTCTTTTAGTCTGACACAGCTttagctgagaaagcagaaaagcgtCGTTGTAGCAAGCGGTCAGAACTCTATGGATAAATGCTATGGATAAACCACAGATGTTGGCACTGCTGTAATTAGCTTGCATGGATCATTGCATGGATCAAGTTTCAGAGTCAGAGATATATGGAAACGATGCTAGCACATCATGCACAATATGTCACCTAACATACATATTGAGAGAACATATCAAGATAAACATATCGAGAGACACTAGCTGAACTCAAGCAGTATCTTTTACATGTGATGGGAGGACAGAACTCCATATCTGATAGCCGAAACTTTGGCCAGTTGGCTTTTTGTGacatgatgtgctacattagaaagattgttagaagaggataaaatagcacttaagtagctaactagctcattATACCTTAATATTTTACGTTAGCCACCACTTTTTTGCCTAGTCAGCTAGCTTTCCATGCAACCAAAACATAGGACTTAgcagcacattggagcttttaTTTGCTAGCCAATGAATTTACGATTTGTCCATCTCCCAGATTGGTAGCTTGGTGCGATACAGAGAAATGGAAATGATGGGCTGGGAATTGGCTACGATGAAATTTGGGGAAAACTGGCTTAAACCACTTATAACAGATTTGGATTCAGAGTAGTTGGACATTTTCTAGCACTTCATCCAGTGTTTTATGCATCTGTACATGCACATAAAGATTTGGCTGAATTCTCCTGTACAAATAGTctaaaaaaggaggaaaaggacATTATACGTTTCACCAAACCCCAAATATCAGAACATATGGGGAATTCCAGCAGGTTGCCACTAAACTCATTTGTaccaactgatttttttttctacaggacCGACCCACACGGAGAAAACAATTAACGGAAGTTGGATTGTTTGTTCGAGCACTGAGAACATTTGaaatatgtaattatttctttaaaaatgtgtataaacaCTTGTAAATAGgcgttctgtgtgtttttcacccACTGCCTTCTCTCATTCTTAGCAGaggctttttttcctctctagaCTTATATATTATAGTGAGTTGTGGAAAGACGTGTTATTTGCTCGTATCTATCTCTTGGTCAGATTTTTTGACTGAAACATTCCTTTCAAACATGTAACGTGTAAATAACTGTCATTTCTCTATTTGTGTAATGGATACTATTGTTATAAAGAGCACAATAAATGTTATTGCACTGGA

Function

NR:

description
PREDICTED: calcitonin gene-related peptide type 1 receptor-like

GO: NA

KEGG:

id description
K04577 CALCRL; calcitonin receptor-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921199.2 True 3808 mRNA 0.44 13 21323924 21352016

Neighbor

gene id symbol gene type direction distance location
ttc29 ttc29 coding upstream 701 21315381 ~ 21323223 (+)
LOC117599257 NA coding upstream 11129 21310075 ~ 21312795 (+)
LOC113530283 LOC108276019 coding upstream 36316 21275430 ~ 21287608 (+)
LOC113530257 LOC108275533,LOC108435580,LOC107565311,LOC107570205 coding upstream 66636 21242246 ~ 21257288 (+)
egr4 LOC108275472,LOC107734701 coding upstream 96181 21225341 ~ 21227743 (+)
vdra vdr,vdra,LOC103045919,LOC108435544,LOC107701250,LOC107702164,LOC107565314 coding downstream 26113 21378129 ~ 21437863 (+)
LOC113530406 LOC108276167,LOC105022368 coding downstream 100252 21452268 ~ 21455848 (+)
LOC117599284 NA coding downstream 169330 21521346 ~ 21535366 (+)
zmp:0000001174 rai2,LOC107653213,LOC107550168,LOC107752425 coding downstream 259787 21611803 ~ 21626745 (+)
LOC113530651 cdkl5,LOC108276197 coding downstream 322321 21674337 ~ 21748403 (+)
G258459 ppp1r14c,LOC107697847,LOC107738512,LOC107664259 non-coding upstream 191871 21115050 ~ 21132053 (+)
G258462 NA non-coding upstream 215909 21107347 ~ 21108015 (+)
G258483 iyd non-coding upstream 218823 21103714 ~ 21105101 (+)
G258476 selenoi,si:ch211-197l9.4,LOC107549067 non-coding upstream 230080 21093329 ~ 21093844 (+)
G258460 NA non-coding upstream 235702 21085382 ~ 21088222 (+)
G258680 NA non-coding downstream 2424 21354440 ~ 21354730 (+)
G258689 NA non-coding downstream 32275 21384291 ~ 21386101 (+)
G258753 NA non-coding downstream 127216 21479232 ~ 21556438 (+)
G258758 NA non-coding downstream 147962 21499978 ~ 21510994 (+)
LOC113530300 NA non-coding downstream 248606 21600622 ~ 21602468 (+)
si:ch73-290k24.5 LOC108275473 other upstream 84925 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 416465 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 809729 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 925210 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1618861 19625529 ~ 19705063 (+)
LOC117599233 NA other downstream 186029 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1319382 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2019728 23371744 ~ 23383653 (+)
G259993 NA other downstream 2035522 23387538 ~ 23389314 (+)
G260415 NA other downstream 2680211 24032227 ~ 24032724 (+)

Expression


Co-expression Network