sdf4 (sdf4,LOC107591077,LOC107673072,LOC107716138,LOC107687443)


Basic Information

Item Value
gene id sdf4
gene name sdf4,LOC107591077,LOC107673072,LOC107716138,LOC107687443
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20037421 ~ 20043667 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921316.2
TCTGAGCGCGAGCCGCCGGCGGCCACGTCAACAGGAAGTAGCCGAGCTGTAAACTTCACGATGCGATGTGTTTAACGGAGCTAGTGGAAGGCTGACAGTCATAACATAACCGTGGTTCGTGTTCAGTGCTGTATTTCCGCTCCGTCTCCGTTAAAGCAGCCGGTCCAGTGAGCAGTGTCTCCAGCTGAGGTGTAAGCTGGCAGTCATGTCCAGTACAAGAGGAGTTTGGACAAACCACCATGGGGCGGCGTTCTTTGCCCTGTTTGTGATTTTGATCATGGATGTCCAAGCACGCCCCGCTAACATATCGGTCCACAGAAACAAACATGCCACCGGTAAGGAGGACAACGAGATCCTTCCTCCTGACCACCTAAATGGTGTCAAAATGGAAATGGATGGCCACCTGAACAAGGACTTCCACCAAGAAGTGTTTCTGGGAAAAGAGATGGAGGAGTTTGATGAAGACTCTGAGCCCAGGAAGAACCGCAAGAAATTAATTGAAATTTTTAGCAAAGTTGATTTCAATAAGGACAGAAGTGTCAGCGCTAAAGAGCTTCAACGCTGGATCATGGAGAAAACAGAAGAGCACTTCCAAGAGGCGGTGAAGGAGAACAAACTTAATTTCCGTGCTGTAGATCCAGATGGAGATGGACATGTGACATGGGATGAGTACCGGGTGAAGTTTTTAGCCAGCAAAGGCTTCAATGAGAAGGAGGTGGCTGagaagataaaaaataatgaagagcTTAAAGTGGATGAGGAGACCCAGGAGATACTGGAAAGTCTGAAGGATCGCTGGTTCCAGGCCGATAACCCTCCAGCTGACCAGCTGCTGAACGAGGAAGagtttctctccttccttcatCCAGAGCACAGCAGAGGCATGCTCAAATACATGGTCAAGGAGATCATCAGAGACCTGGATCAAGATGGAGACAAAGAACTGACGCTGTCCGAGTTCATCTCTCTGCCCATGGGCACAGTGGAGAACCAGCAGGGCCAGGACATTGATGACGACTGGGTTCGTGAGCGCAAGAAGGAGTTTGAGGAGGTCATCGATGCCAACCACAACGGCATTGTCACCATGGAAGAGCTCGAGGAATACATGGATCCCATGAATGAGTACAACGCTCTTAATGAGGCCAAGCAGATGATCGCTGTTGCCGACGAGAACCAGAACCACAACTTAGAACTGGAAGAGATCCTTAAATACAGCGAGTACTTTACCGGCAGCAAGTTCATGGACTACGCCCGCAACGTACATGAGGAGTTCTAGTACTTTCTCCCCAATTCTATAAAGAGAAAAAACCATATTCTGCCCAACAGCTATACAGGCAGCCGTATGGTACACACGTTCCTTAGGATGGCATATGGGTTTGCCTCccagggatctgattggctctttGGAGAGggagtgtatgtttgtgtgtgtttgtatggaTGCTTGAAGCAGCATCTAGAATGTTAATGTCTCAGTGTAAATCATTCAGAATTTTCTGATGTTTCTCTTTAATATTTTCACACACCATCAGAATCTGCCTTCTGTTCGAGCTGCTTTTGCTGAAGTGTTAATTAATGAggttaatattttatatgagGAGatttgaggggggaaaaaaatcattgcttTGAGTTATAACCAGGTCTTTTGCTGCCTCATTGTATAGAGAGATAAGACTTGTAAAAAATAGATGAAGCCTTCGtgagaaatgtaaataatattattgaAAAAATGATATGATATATTAACATTTGATTTTTACAAGAAGCTCTTGAGCTGTGGACACCTGCTGTTTCCGGAGTTCAAGGGCTAACACGAATAAAAGAACGGTAATGCCAAAAAAGTCAAACGGTAACACtggtgtatgtacatatattaaaaaaaataataattctcgCACTGTTGCACTCAAGATGTCTAGAcatttagttttattaaatatatatgtgcaTTTTCTTAATTGACaagaaaagacttttttttttttggccctcGTATGGCCGGTGTTTCTGTTTGCACATTGTATAAATGAGCAGTTATTGACAAGATTATTGTTGGATAATTATGCAGTTCAGTCACTGATATAATGTAGCTTACCCATCCGCCTCCTTCATATCCCCCTGAGAAGGAGCGATTATGGATTCTCTATGGATtctaggtgtttttttttttttctcatgttgaCTGAGAGAACAGGGACCGACCCAGAACAAGCTGGCCTTAACAGAATTAGCAGCTCATTGGCTCTGGAAACAGCACTGGTACAGGGAGACTCTAATACGTCCCATGGATCATGTGTGCATTAGCTTTCACGTAATGAGATGATAATCCCTGGATCACATGCAAagcaaaagatttattttagagTTATTGTTGCTTCTCCTTTCCGAGACTAAAATGTTACACTTAAAATGGAGTAAATCTGTGGgcatttattgtgaaattgGATGTATTGATgtattatttcaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaacaatattttcttaagttttacaagttttatttaatatttaataggtCCCCTCATTCTTCTCTGAGAGCTTTGCTTTGTATTTAATTCCATTCTAATAAAGTATGTTCTCTTGGCTAATTTATTACCATCTTGTGCATGATATGAGTTGATGAAGCCTTCTGTGTACAGTATGATGCCTTTGTCCTGTggaaatgtttgatttaaagctgtttctttcagctgtgtgCCCACATTTTCCTTCAGCTGCTGAATGTCTTGGGGCTTTTATGCATTAAACAATGCTGTCTAAACTGA

Function

symbol description
sdf4 Predicted to enable calcium ion binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in Golgi lumen. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including epidermis; hatching gland; notochord; periderm; and polster. Orthologous to human SDF4 (stromal cell derived factor 4).

NR:

description
PREDICTED: 45 kDa calcium-binding protein

GO:

id name namespace
GO:0005796 Golgi lumen cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K19934 SDF4; calcium-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921316.2 True 2845 mRNA 0.41 7 20037421 20043667

Neighbor

gene id symbol gene type direction distance location
syt6a syt6,syt6a,LOC108433426,LOC107673111,LOC107591076,LOC107593918 coding upstream 72008 19900014 ~ 19965413 (+)
zbtb48 zbtb48,LOC102780700 coding upstream 188759 19839711 ~ 19848662 (+)
zgc:158263 LOC108276042,LOC108441406 coding upstream 242424 19784571 ~ 19794997 (+)
ptpn22 NA coding upstream 572085 19439436 ~ 19465336 (+)
atp6ap1b LOC108275744 coding upstream 705447 19322799 ~ 19331974 (+)
ccnt1 ccnt1,ccnt2,LOC102787965 coding downstream 76283 20119950 ~ 20127658 (+)
pmelb LOC108275940 coding downstream 86039 20129706 ~ 20138298 (+)
LOC113530927 tuba1a,Tuba1a,tuba1c,LOC108255233,LOC108275946,LOC107664173,LOC108431527,LOC102311436,LOC105935211 coding downstream 103511 20147178 ~ 20155096 (+)
gdap1l1 gdap1l1,LOC107594051,LOC107664149,LOC108433413,LOC107707014,LOC107697944 coding downstream 139570 20183237 ~ 20198652 (+)
rarga rarg,rarga,LOC107715005,LOC107593976,LOC107697942,LOC107664174,LOC107707012 coding downstream 188421 20232088 ~ 20268787 (+)
G257774 NA non-coding upstream 27317 20008639 ~ 20010104 (+)
G257781 NA non-coding upstream 29267 20007952 ~ 20008154 (+)
G257713 NA non-coding upstream 291475 19743485 ~ 19745946 (+)
G257710 NA non-coding upstream 302208 19733351 ~ 19735213 (+)
G257671 NA non-coding upstream 370836 19660638 ~ 19666585 (+)
LOC113530699 NA non-coding downstream 14584 20058251 ~ 20070248 (+)
G257813 NA non-coding downstream 21810 20065477 ~ 20066008 (+)
G257814 NA non-coding downstream 55563 20099230 ~ 20099498 (+)
G257802 kansl2,LOC107716132,LOC107687436 non-coding downstream 57341 20101008 ~ 20104040 (+)
G257803 kansl2,LOC107716132,LOC107591080 non-coding downstream 64723 20108390 ~ 20109226 (+)
si:ch73-206d17.1 LOC108275771 other upstream 332358 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 558526 19478302 ~ 19478895 (+)
pkig NA other upstream 814862 19198426 ~ 19222559 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other upstream 1103102 18879481 ~ 18934319 (+)
LOC113530386 slc26a9 other upstream 2849044 17175701 ~ 17188377 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 347142 20390809 ~ 20398714 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other downstream 466577 20510244 ~ 20514195 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 859438 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 1184653 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 1494378 21538045 ~ 21542427 (+)

Expression


Co-expression Network