ddx58 (ddx58)


Basic Information

Item Value
gene id ddx58
gene name ddx58
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24624937 ~ 24636129 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311590.1
GCAGAGACAGTCCAGAGACAGTGCAGAGACAGAACACAGATAttagagagacagaacagagtCCAGTGGATCATGTACGAGCTGGAGAAGGAGTCTCTGCGGCTCTACAGCCACTACATCGCTCACTTTTTGCGACCCTCTTACATCCGGGGATTTTTGACAACCTACCTGGATGAAGAGTGTGTAGAGAAGATCTTATCGGAGGAGAAGTTGTCACGGACGGCGGCGGCTCAGACGCTGCTGGATAAGATGTTGGACCTGGAGGAGGCCGGCTGGTTCCAGGGCTTCCTGGACATGCTGCAGGTTTCAGattacACAGGTCTCCACATGGCGATCAGTAAGTGGGACTTTAAGGAGCTGGAGGATCTGTGTCCTCACAGGAAGCTGCTGGATCAAGTTGAGATGTCCATCACCAAAAACATGAAACCCAGAGAGCTGCTGCCATACATGAGCTGTCTCACAAACCGAGAGTGTGAGGAGATCAGAGCGgtggaggagcagaaggggtgtGTTGCAGCGAGTGAGCTGTTAGTGGACACTCTGAGACACTGCGATAAATCAAACtggtttaaagtgtttaaactCGCACTGGAGAACTGCAGCCAGAATCTCGCTCTACAGCTGCTCGAGCccgatgaGAATGGGAATTGTGTTCAGGACTATGAAGAGGTAGTCATGCCAACGGTGTGTTTCGAGTACAGAGAGGACGGCGAGAGCGACAACctgatgagcagcaacagtgTGACGAGTGTGACTGAGCAGCGTGTCAAGGATGCggaggggggcgtggccagtgTGGgtgagagacatacagagaagAAGTTGAGAGAGTATCAGAAAGAGCTCGCTGCAGCCGCATACAGCGGCCTCAACACCATCATCTGTGCTCCCACAgGTTGTGGTAAAACTATTGTTGCCGTGGCGATCTGTGAACATCACCTGAAGAAATATCCTGACAAGGCCAAAGTGGTTTTCATGGCAACCAAAGTGGAGGTTTATGAACAACAGTACAAACTGTTCCAAGAGCACTTCAGCAAGGATCCGGACatcaaggtgaaaggtgtgtgtggggACATGGGGGACGTGAATCTGCCCACCCTGGTGTCCAGCAATGACGTGTTGATAATGACTCCCCAGATTCTGGTGAACGCTCTGCAGCGTGGTGATGTGACCTCTCTGAACACcttcacactgctgctgctggacgAGTGTCACAACACCACCGGCAAACACCCGTACAACAACATCATGAGCCTCTACATCGAaaccaaacacaccacacaaaaaAACTCACTGCCTcaggtggtgGGCTTCACTGCGTCTGTTGGTATCGGGAGTTTTAAGAATGTGCCCGAGGCTGAGAACAACATCTGCCAGCTGTGTGCTAACCTGGATGCCCGGGTCATCACCACGGTTACTAATAATATTGATGAGCTGAGGTTATTTGTGCACACACCTGAGAAAGacttttttccGGTCCCACCACGCACCTCAGACCCCTTCATCCTCATCATTAAAAACATCATGAGGAACATCGAACAGCTGGCTATAAAAGTCTACAACATTGgcACAGTGTCCCAGGTACAGAGAGGTGATTATGGCAGTCAGATGTACGAGCAGTGGATTGTGGATGTACAGAAACGCTGCACACTGCTACAGTTCACTAACGCTGAGGAGGAGCGCAAAGTCTGCAGAGCACTATACACCTACACTGAGCACCTCAGAaaATATAACGACGCTCTGATCATTAACGAGGACGCTCGCACTAAAGACGCGCTGGACTTCATGGACTCGTTCATCAAGGACATCAGCAACGCCGCCCCAGACCCCACCGAGCGCCAGCTCATTGACTTATACCACGCTCAGCGTGAGCAGCTGCGCCATTTAGCCGCTGAAGGAGAACAAAACCCCAAACTGCAGGAGCTCAAGTTCATCCTGGATGAAGAATACAGCAACAACGAGCAGACTCGCACTGTGCTCTTCGTCAGGACTCGCGCCCTCGCTGATgctctGAAAAAGTGGATAGAGGAGACAGATTCACTGAAGTTTCTGAAGCCTGGAGTTCTGAttggaagaggaagaaaatcaCAGCTGACAggctcaggtatgacTCTGACAGGACAGAAGGGTGTGCTTGACTCCTTTAAGAGCTCTGACCAGAGTAAGATTCTCATCGCCACCTCCGTCGCTGACGAGGGCATCgatatcccacaatgcaacCTGGTGCTCATGTACGAGTACGTCGGCAACGTCGTCAAGATGGTGCAGGTTCGAGgtcgGGGCAGAGCTCAGGGCAGCAGGTGTTTTCTGATCTCCAGCAGGCAGGAGCGCATTGATAAAGAGAAACTGAACATGGACAGAGAGAAGCTGGTGGACGCGGCCATTAAACTCCTGCAGAACTCACCTGAGCGCCTGTGTGCCAAGGTGTCTCacctctcacctGAGGACGTGGCCCGGAGAGCCCATGCGAACTCGAGTGTAGAGAAAACTCTGACTGAGGGAAGCTACGAGTTCCTGTGTGGAAAGTGCAAGAAGTTTGCCTGTTCTAGTGATGACCTGCGTGTGCTAAAGGAATCTCACCACGTGGTGCTGGATCGCTCCATATTCCAGCGCTGTGACACTAAACCTCACAATAAAATCCAGACCTTCGACAACATCACCAAAAAGGAGAAGATGTTTTGTTCTGACTGTAAACATGACTGGGGCATCATCGCCTCCTACATGAATATAGagaatTTGCCGGTGGTGAAGATTGAGGCTTTCATCCTTCAGGACCGAGACACGAAGAGACTGCAGATTTTCAAAAAATGGCGTGACGTCACGTTCCGTATGCGAGAGTTTGACGTGTCCGAGATGACGGTGGATATGCGGGAGCCAAGAACATAGAGACAAAAACGAGATGATAAACATCTAAAACTgccagtctcacacacacacacacacacacatttgtactAATATCATAGGGTCATGTTTACTAAGGCGAATACTATTTACTGGAGTTTTAGTGATGTGTTGCACTGGTGGGCGGAGCCAATGTACTAGGCAAATTAACATAGAcaaggtgggttttttttcatgtattgtGGGGTTTTGTTACGACGTTCTTGTAACGTTATTCTTCTTTTGAAATCACACACAACCCGAAAacgatctgattggctgaagcaAGTCACTGATTAAAACTCTGGCATTTTTTAGTTTCCTCAAATAACTTCAGGAAGCAATATAGTTGCAAAATCATTTTGCGAAATCACAAAGTCAGTAATTATTGAACAGCTATTGGCTTTGATCAATGAGAATGGGCGGGTCATTAAATTAAGCCCCGCCCCCGTGCTGTTGTTTGAGACGGAAAGTGCACAAGAGTAGCGACGCCCCTTTGATCTTATTCTCGACAGTCACATGGTTTTTAACCACAAAATAAAGTTTGtgatgatttttacattttttactcaCAACCTGAAAcctcaataaaatattttaattttaaacata
>XR_004579660.1
GCAGAGACAGTCCAGAGACAGTGCAGAGACAGAACACAGATAttagagagacagaacagagtCCAGTGGATCATGTACGAGCTGGAGAAGGAGTCTCTGCGGCTCTACAGCCACTACATCGCTCACTTTTTGCGACCCTCTTACATCCGGGGATTTTTGACAACCTACCTGGATGAAGAGTGTGTAGAGAAGATCTTATCGGAGGAGAAGTTGTCACGGACGGCGGCGGCTCAGACGCTGCTGGATAAGATGTTGGACCTGGAGGAGGCCGGCTGGTTCCAGGGCTTCCTGGACATGCTGCAGGTTTCAGattacACAGGTCTCCACATGGCGATCAGTAAGTGGGACTTTAAGGAGCTGGAGGATCTGTGTCCTCACAGGAAGCTGCTGGATCAAGTTGAGATGTCCATCACCAAAAACATGAAACCCAGAGAGCTGCTGCCATACATGAGCTGTCTCACAAACCGAGAGTGTGAGGAGATCAGAGCGgtggaggagcagaaggggtgtGTTGCAGCGAGTGAGCTGTTAGTGGACACTCTGAGACACTGCGATAAATCAAACtggtttaaagtgtttaaactCGCACTGGAGAACTGCAGCCAGAATCTCGCTCTACAGCTGCTCGAGCccgatgaGAATGGGAATTGTGTTCAGGACTATGAAGAGGTAGTCATGCCAACGGTGTGTTTCGAGTACAGAGAGGACGGCGAGAGCGACAACctgatgagcagcaacagtgTGACGAGTGTGACTGAGCAGCGTGTCAAGGATGCggaggggggcgtggccagtgTGGgtgagagacatacagagaagAAGTTGAGAGAGTATCAGAAAGAGCTCGCTGCAGCCGCATACAGCGGCCTCAACACCATCATCTGTGCTCCCACAgGTTGTGGTAAAACTATTGTTGCCGTGGCGATCTGTGAACATCACCTGAAGAAATATCCTGACAAGGCCAAAGTGGTTTTCATGGCAACCAAAGTGGAGGTTTATGAACAACAGTACAAACTGTTCCAAGAGCACTTCAGCAAGGATCCGGACatcaaggtgaaaggtgtgtgtggggACATGGGGGACGTGAATCTGCCCACCCTGGTGTCCAGCAATGACGTGTTGATAATGACTCCCCAGATTCTGGTGAACGCTCTGCAGCGTGGTGATGTGACCTCTCTGAACACcttcacactgctgctgctggacgAGTGTCACAACACCACCGGCAAACACCCGTACAACAACATCATGAGCCTCTACATCGAaaccaaacacaccacacaaaaaAACTCACTGCCTcaggtggtgGGCTTCACTGCGTCTGTTGGTATCGGGAGTTTTAAGAATGTGCCCGAGGCTGAGAACAACATCTGCCAGCTGTGTGCTAACCTGGATGCCCGGGTCATCACCACGGTTACTAATAATATTGATGAGCTGAGGTTATTTGTGCACACACCTGAGAAAGacttttttccGGTCCCACCACGCACCTCAGACCCCTTCATCCTCATCATTAAAAACATCATGAGGAACATCGAACAGCTGGCTATAAAAGTCTACAACATTGgcACAGTGTCCCAGGTACAGAGAGGTGATTATGGCAGTCAGATGTACGAGCAGTGGATTGTGGATGTACAGAAACGCTGCACACTGCTACAGTTCACTAACGCTGAGGAGGAGCGCAAAGTCTGCAGAGCACTATACACCTACACTGAGCACCTCAGAaaATATAACGACGCTCTGATCATTAACGAGGACGCTCGCACTAAAGACGCGCTGGACTTCATGGACTCGTTCATCAAGGACATCAGCAACGCCGCCCCAGACCCCACCGAGCGCCAGCTCATTGACTTATACCACGCTCAGCGTGAGCAGCTGCGCCATTTAGCCGCTGAAGGAGAACAAAACCCCAAACTGCAGGAGCTCAAGTTCATCCTGGATGAAGAATACAGCAACAACGAGCAGACTCGCACTGTGCTCTTCGTCAGGACTCGCGCCCTCGCTGATgctctGAAAAAGTGGATAGAGGAGACAGATTCACTGAAGTTTCTGAAGCCTGGAGTTCTGAttggaagaggaagaaaatcaCAGCTGACAggctcaggtatgacTCTGACAGGACAGAAGGGTGTGCTTGACTCCTTTAAGAGCTCTGACCAGAGTAAGATTCTCATCGCCACCTCCGTCGCTGACGAGGGCATCgatatcccacaatgcaacCTGGTGCTCATGTACGAGTACGTCGGCAACGTCGTCAAGATGGTGCAGGTTCGAGgtcgGGGCAGAGCTCAGGGCAGCAGGTGTTTTCTGATCTCCAGCAGGCAGGAGCGCATTGATAAAGAGAAACTGAACATGGACAGAGAGAAGCTGGTGGACGCGGCCATTAAACTCCTGCAGAACTCACCTGAGCGCCTGTGTGCCAAGgtggacCGTTCCAGAAGGAGGACGTGGCCCGGAGAGCCCATGCGAACTCGAGTGTAGAGAAAACTCTGACTGAGGGAAGCTACGAGTTCCTGTGTGGAAAGTGCAAGAAGTTTGCCTGTTCTAGTGATGACCTGCGTGTGCTAAAGGAATCTCACCACGTGGTGCTGGATCGCTCCATATTCCAGCGCTGTGACACTAAACCTCACAATAAAATCCAGACCTTCGACAACATCACCAAAAAGGAGAAGATGTTTTGTTCTGACT

Function

symbol description
ddx58 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Acts upstream of with a positive effect on interferon-gamma-mediated signaling pathway. Acts upstream of or within I-kappaB kinase/NF-kappaB signaling; defense response to other organism; and regulation of transcription, DNA-templated. Located in cytosol and nucleus. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human DDX58 (DExD/H-box helicase 58).

NR:

description
probable ATP-dependent RNA helicase DDX58

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K12646 DDX58, RIG-I; ATP-dependent RNA helicase DDX58

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311590.1 True 3495 mRNA 0.49 19 24624937 24636129
XR_004579660.1 False 2688 misc_RNA 0.51 18 24624937 24634545

Neighbor

gene id symbol gene type direction distance location
LOC113530697 NA coding upstream 1132 24618620 ~ 24623805 (+)
LOC117599218 LOC108275604,LOC102207396 coding upstream 11848 24599158 ~ 24613089 (+)
LOC113530532 LOC108275719 coding upstream 96022 24520879 ~ 24528915 (+)
mdp1 mdp1 coding upstream 309470 24312226 ~ 24315467 (+)
cltrn tmem27 coding upstream 318276 24299596 ~ 24306661 (+)
LOC113530267 LOC108275728 coding downstream 44491 24680620 ~ 24689895 (+)
aimp1b LOC108275725 coding downstream 56902 24693031 ~ 24698433 (+)
sgms2b LOC108275722 coding downstream 78888 24715017 ~ 24725235 (+)
LOC117599303 NA coding downstream 161100 24797229 ~ 24801608 (+)
LOC117599304 LOC108275642 coding downstream 165763 24801892 ~ 24802529 (+)
G260677 NA non-coding upstream 7720 24616168 ~ 24617217 (+)
G260623 tcp1 non-coding upstream 20878 24528252 ~ 24604059 (+)
LOC117599259 NA non-coding upstream 96022 24523258 ~ 24528915 (+)
G260632 LOC108275555 non-coding upstream 145137 24477566 ~ 24479800 (+)
G260592 NA non-coding upstream 194246 24405044 ~ 24430691 (+)
LOC113530849 NA non-coding downstream 69158 24705287 ~ 24706115 (+)
G260691 NA non-coding downstream 89718 24725847 ~ 24728397 (+)
LOC117599308 NA non-coding downstream 99594 24735723 ~ 24736373 (+)
G260697 NA non-coding downstream 109652 24745781 ~ 24751808 (+)
G260664 NA non-coding downstream 132793 24768922 ~ 24771134 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 171399 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 355670 24268577 ~ 24269267 (+)
G260415 NA other upstream 592213 24032227 ~ 24032724 (+)
G259993 NA other upstream 1235623 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 1241284 23371744 ~ 23383653 (+)

Expression


Co-expression Network