LOC117599303


Basic Information

Item Value
gene id LOC117599303
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24797229 ~ 24801608 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312221.1
AGAGGATTGTGTCAGTTTTTCTGTCAGACTGTTAGCATTTTAGCTAAAGACAATCTATAAAGAAAACATCGCGCTTTAACGAACTTTtaacacattatatttatttctggtgACTCATTCTGAGGTAAGAAGGAGAAACCCATATTAATCTCACTAATGGCCAAGACAGATGAGAAAGTCATgaaaaaaacaatggaaaaaCACAAGAAGCAGGTGATGGATGGAGGAAAGGATGGAGAACCGAAACCAGATGAAGTGAAATCAGGTAAAAAACTGAAGCGTCCCAAAGCCACACACCTGAAAACCCCTGAATCGGTGAAGAGAAAGTcgggagagatggagggagcgACTGAGAAAAGCAGAACAGGAGaacagaaagatggagagaggaagaaagaaaaagggagggATGTGTCGGGCgatggagagaagagaggaaggaCAGGAAGTGGGGATGAGAACGGACAGGATGTGGAAGAGAGTCGGGTTATAAAGAAAAGCAGAGGACATGAAGATGGCAAGcaGAACGTCAGAGTTTGGACCGTGTCGTATTCCTCCACAGTGGATCTCGTAGgtGCAGACAAGAACATCAAGCCGGGGACACACAgGCGAGAGAGGGATGAGATGGAGAAGTGCGGTCCGGTTCAGACTCTCAGCGcgcacagagagacagacaggaagaagaGCAGAGAAGCGAGGGATCAGAGGGACGAGAGCAGTGATGCGGAACAGTatgtcTCGTGGGTGCAGTGCAGTAACCCTGGATGTGGTAAATGGAGGAGACTCAGTGATGGTGTTGATCCTTCAGTTTTGCCTGATGACTGGATCTGCAAAAAcaacacagATTGA

Function

GO: NA

KEGG:

id description
K24688 ZCWPW1; zinc finger CW-type PWWP domain protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312221.1 True 849 mRNA 0.47 7 24797229 24801608

Neighbor

gene id symbol gene type direction distance location
sgms2b LOC108275722 coding upstream 71994 24715017 ~ 24725235 (+)
aimp1b LOC108275725 coding upstream 98796 24693031 ~ 24698433 (+)
LOC113530267 LOC108275728 coding upstream 107334 24680620 ~ 24689895 (+)
LOC113530697 NA coding upstream 173424 24618620 ~ 24623805 (+)
LOC117599218 LOC108275604,LOC102207396 coding upstream 184140 24599158 ~ 24613089 (+)
LOC117599304 LOC108275642 coding downstream 284 24801892 ~ 24802529 (+)
LOC117599305 NA coding downstream 1563 24803171 ~ 24804413 (+)
zgc:158659 pik3ca,zgc:158659,LOC107571432,LOC107653898,LOC108275608,LOC102200943 coding downstream 5909 24807517 ~ 24826683 (+)
txk LOC108275609 coding downstream 54972 24856580 ~ 24868832 (+)
zgc:56304 g3bp2,zgc:56304,LOC107748926 coding downstream 69061 24870669 ~ 24881640 (+)
G260705 NA non-coding upstream 22005 24774515 ~ 24775224 (+)
G260664 NA non-coding upstream 26095 24768922 ~ 24771134 (+)
G260697 NA non-coding upstream 45421 24745781 ~ 24751808 (+)
LOC117599308 NA non-coding upstream 60856 24735723 ~ 24736373 (+)
G260691 NA non-coding upstream 68832 24725847 ~ 24728397 (+)
G260711 NA non-coding downstream 4348 24805956 ~ 24806167 (+)
G260713 NA non-coding downstream 25715 24827323 ~ 24829045 (+)
G260718 NA non-coding downstream 28172 24829780 ~ 24830030 (+)
G260725 NA non-coding downstream 36807 24838415 ~ 24839487 (+)
G260736 NA non-coding downstream 62554 24864162 ~ 25022554 (+)
ddx58 ddx58 other upstream 161100 24624937 ~ 24636129 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 343691 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 527962 24268577 ~ 24269267 (+)
G260415 NA other upstream 764505 24032227 ~ 24032724 (+)
G259993 NA other upstream 1407915 23387538 ~ 23389314 (+)

Expression


Co-expression Network