LOC113530917


Basic Information

Item Value
gene id LOC113530917
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24348977 ~ 24351472 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403195.2
CGATTCCTAAGTGAGTTGTATCAGAGAATCGACTCTTCTGGAATCGAATCCCAGCCCCACTGTGTTCAATCGGTGAAATTACCTCAGGGTCAAAGATTGAGACACAGGGTAAAATGATTTCCAGTAAGCCGTACAGATTGTTTACCACAGAAACACTGGCATTATTATCATTGTCGCTCGCAACGGAAAGATTTCCATTCACCTCAAAAAAGTTTGGACACTTTGAAGATGTGTCCAGAATAATTGGAGAACTCAGCAATGAAGGATTTcaagctgaagaaaagcagaagaatTCATTCACCAATATCAGGGCTGGACCTTAGAGACGAGAGACAAGGAGAAAACAGGACTGAAAAGAAACAAAGTCTTAATCTTGGTTAGACCTCAGCGCTCTGAAGTATATCGGCGTCTGATTCTTACTTTCCCACAGAGTTTATGCTTCTATCTCTTGATTAATCTCAGTCTTTGTCTCTTGGTTAGTCTTGGTCTTTAGGTCTCTTGACAGTCCATCCTTTAAGACTGATTTTTGGCTGATTTTAAAGTCTACAGATTTGGCTGAAATTCCTGGTATATAGAGCTCTGAATTTTGCAGTGAGAGCTCAGTAAGTATTTCCTTACACAGCCCTTAATGTGGCCTGACAGTAACACACTTTTTGTGTCACTCTGGCTTGCTAATAGGGGAATAAAACAAGTTTTGTTGCTTTGATAAATCGCTAGGCTACAAGTTGAACTATCTAAACCTCTACACCATGCTATCCATCATAACACTTTTATGCAGAATGTTGTGTTCTGTGTGCTGAAGTGTGAATATTACAGTTCAGACTTTATTGTGCCAGATGCACACTGATACAAGATGCTTATTAAAATCACAAGGAAGAAGAACCTTCCACTGAATTAAAGTCCCTAGTGTACAGGATACCGTGAGAGTTAGATGTCAGGAGATTCTTCTGAGGTTTTTTGTCTCCACCTGACACACTATACCAGGGGTGATACATTGTGCAAATGATGGGCTTCAGTCATTAATAGTACTGTAAGATTTCATAATAACATGAGCTTGAACTTCACTGGAAAATAGTGAGCAAGAAAAGaaactcttgctcttttgttttaggagcaaacagtgaaacctgactgttatgacttatgtttgagatcagtgaAAATACTTCTCCTATTACGTACCATTATAACTGTGCTAACTATCTTTTTGTGACATCGGCATGTCGCACACCTGCTAACGTCTAAGAGAATAACGAAAAATAACGAAAACagcattaaccaaaaaaaattcGCACCAGAATTGCTATACATATCACAAACATCTCAATATGAATGTGTTTTAGGGTGACCTTCTGTCACTCCTCTTGTGGAGAACCTacagaggaaatgaaaagaaagcGCAATAGTGAGAGAGACACGGGGTTTCTGCATGCTATTTATGGGAAACATTACAGACAGTAAGAATgattacacacaaatatattacattaaaaacaatcatAACAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403195.2 True 1508 lncRNA 0.39 3 24348977 24351472

Neighbor

gene id symbol gene type direction distance location
mdp1 mdp1 coding upstream 33510 24312226 ~ 24315467 (+)
cltrn tmem27 coding upstream 42316 24299596 ~ 24306661 (+)
LOC113530931 LOC108275754 coding upstream 160606 24166720 ~ 24188371 (+)
slc1a7b slc1a7b,LOC108440026,LOC107590475,LOC107692806,LOC108275751,LOC107687581,LOC107566235,LOC106560428 coding upstream 217870 24091122 ~ 24131107 (+)
gpx7 gpx7,LOC107687580,LOC107562253,LOC102781798 coding upstream 293453 24048016 ~ 24055524 (+)
LOC113530532 LOC108275719 coding downstream 169407 24520879 ~ 24528915 (+)
LOC117599218 LOC108275604,LOC102207396 coding downstream 247686 24599158 ~ 24613089 (+)
LOC113530697 NA coding downstream 267148 24618620 ~ 24623805 (+)
LOC113530267 LOC108275728 coding downstream 329148 24680620 ~ 24689895 (+)
aimp1b LOC108275725 coding downstream 341559 24693031 ~ 24698433 (+)
G260441 NA non-coding upstream 177948 24170370 ~ 24171029 (+)
G260409 NA non-coding upstream 187337 24158866 ~ 24161640 (+)
G260434 NA non-coding upstream 202638 24145990 ~ 24146339 (+)
G260431 NA non-coding upstream 208358 24135794 ~ 24140619 (+)
G260430 NA non-coding upstream 217019 24131718 ~ 24131958 (+)
G260592 NA non-coding downstream 53572 24405044 ~ 24430691 (+)
G260632 LOC108275555 non-coding downstream 126094 24477566 ~ 24479800 (+)
LOC117599259 NA non-coding downstream 171786 24523258 ~ 24528915 (+)
G260623 tcp1 non-coding downstream 176780 24528252 ~ 24604059 (+)
G260677 NA non-coding downstream 264696 24616168 ~ 24617217 (+)
G260483 LOC108275756 other upstream 79710 24268577 ~ 24269267 (+)
G260415 NA other upstream 316253 24032227 ~ 24032724 (+)
G259993 NA other upstream 959663 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 965324 23371744 ~ 23383653 (+)
LOC113530514 LOC108275916 other upstream 1668435 22671398 ~ 22680542 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 49112 24400584 ~ 24453538 (+)
ddx58 ddx58 other downstream 273465 24624937 ~ 24636129 (+)

Expression


Co-expression Network