G272450


Basic Information

Item Value
gene id G272450
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20716511 ~ 20737500 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU322859
aatttttttttttttttttttttttttttttttttaaaccataaaaGGCTAGTGCTGCTAATGGCAAGTGAAATCTGAGTGGACTCTCCTTAgtgttatgcaaatgagaacatgcaaacaggTTCCATCAGGCTGTGAGGGAGCAGTGTTACCATATACATGTGAAGCACAAACAGCACAAGCTGAAGAGGCAACCGAGGCATCCAGACTCGATTCATGGAGCTCTAAAGGATCATTTACAGTTTTGCataacaaaagaaagaatggTGTGAATGGGGAGAACTTTCCAGGCAGAATTACTGCTGCTGAATCTGGGCTTGCTGGGGTGAGGGAGTTATTTCTTTTAGGATTCCCATCAATTTACCAACAGCAGCAATGCCAGTCCCAGCAGGGGCTTTATAACagtaaatgagttttaaaataaaagccagAACTGGGCAGGACATGTCGAGAAATGAGACTTCATCCCACAACGGGGAAGTGCTTTCTCTTTACTACTGGACTGCATTTTTTATAGGCTCTAACTAGACGACCACTTCAAGCTCACCAACAGCAGTGAAATGACGAATCGCAGCATGCAGCAGCCCTCATAATAAGCTGCTACGCtcctaatcttttttttgtgcaacCATGTTATTTGCATTAAGCTTCGAGAACATTCCTCACTCCTAAGCCTGCAGGGCCTCAGCACAACACATTAGAGTGGTGGAAATGATGGCAGTGCTTTTCAAGTCTTAGCAAGCGATGCGATGAGTTTTGTACCGCTTCAGAAAAATAATTGGCGTGTGCATCTCTCATTTGTGTTCAGTTTGTTAAATTTAGATGAAAAGCCTGTATAAGGGTACAGTCATTGCAGTTGTTTAACGCCTAAAGGAATCAGGTGCGTGACCTTTATTTATTAGAGATCATGTACCCTATAAAACAAAGGCTCAACCCTAATCTATCCAGTGCTTTGAAGAGTAATTTGATAAAAATGCACTAAACCATGAGTCAAGGCAAATTCTGCAAGGCAGCAGATGTCCTGTAGCAGGGTTGcatcagaaaacaaaatgttccAGCCCTCCAGGTGCGAGAGTAATGATGACGATGTTCGAGAATGGTACGGCTGAACCCAAGTAAACTGTGCCTAGAGGAAGGTTTAGTGCTCCTGAAGCTAATTCAGAAGCAGATGACATGGTGAAGCCAGCAAAGTGCAGCCAAATCGCAGGAGCTAATCCTCACATTAATCTGGTTCCATTACCGGAGACTACACGGGTCAAGACCAGAGCAGGAGACTTTGTCCaactgcatgcatgtgtgtgagtgtgtgtgagagagaggggaggaatGTCTAAGTTTAAAAATGAGCACGTCTCACAACCCTGTCTGGTTAAAATGTGATGAAATTAGAGTTTGGTCTGAATATCAGCTCAAAGCTAGAGGACATGTCTAACCTCTTTGTAAACCTCTACATCTAATCTCTCTCCtcaaattaaaattgaaatcaTTTAAAGTGGATCAAATGTAAGAGTGGTTAAAATGTCAATGATAAAGACACTGACCGTTAGCAAACGTACtcttcttcattttaaaaaaaaaaaaaaaaaaggaaatctaATCTTAAACCTTGAACTTGTCCATGTTCAGCCTTCTCATTTTAAACTGCATCACATCAAATGTGACATGCATTAGGAAGATTTTGAATTTTCAtacttttcctcttcttcttcttcttttcttccagATGTTAAgctaaaagtctaaaaaaaaaaaaaaaagaattggtcCACTGACAAAGCGACCAGCTAGCTTTTGctcaacaaatattaattctCATCTAACATACAAAATACTCTTTGTAAATCCTTGTGCAGGCTGATTGatttaaatcagtgtgtgtaggtgagcCTGAAGGTGTACGTGCATATGATGCACCTTCCCATGCCTAATAAGAGTGCATACAGGGTACACACTCCTATCTGTGTATCTTGTCATGCTCTGGCCTGTAGCCTTCATATACGGCCCAGGCCAGCTGACTTCTTGCATTGTTGATCCCTGTAGgtagaagaaaacaaaaaggagcaaaaaaaaaagtgctcattTAATAGGATTCCAAAATATTATGCATAAAAAATGTatgcacagtttaaaaaaaaaagaaaaaaggaagctaCTATGATGAAGATTCAGTTTGATGGATGACAAGTGTActccattgattttttttttctttcctctgtgcTCAAAAAGGACAGACAGCCTGATACAGAGGTcaagaatacaaaaaaacacCGCAAGACCATGTCCATCGAGCTTCCCTGGTTAGTAATCTTAACGGCGAACACAAATAGTGTTGCGTCACAGTCTGTTAGGCCTCGAGTTAAGGGAAATGACTTGCGCATAAAGAGAGACGGATGTGACAGAAGAATAATACTCACTCGGTGCGCCTGTAAACATGATGGAGAACAGGTTGATTCCCATAGTGACAGCGTAGAAGACAGGCAATGCCCTGAGTCCGTTGGGAACCGGATCCTtctacaaacacagaaacaaagagagaaaaattttAGACACCTTAATTGTTTTCTCCAAATTGCAGCCATTATCTCTAATCACACAGAGAGGCTTCAGCTGCAAGTGTGTCGGTAAAACCTGCGCAAAAAGAAGCAGCACGTTTGCATGCTGTCTCTCTGGTCTAGAATGTCCCCATTGTGGCGCCTCGGCCATTATGCTAATTCAACCTTCGACATGACTCATGGAGGGAGAGGTTTCCTGTTCTTACCTTCTGCAAGATAAACATGCGGACAAAGTAGAAGAGAACGGCAGACATGAAGCCGGAGAGGAGCGGGGAGAGGAACCAAGACGCAACTGTAAGGGGGGGAAAGAAACAGGACATGAATATAGGGCAGAACACAGGTAACAGTCCTGATTTAAAGGAACACTCGGGCATTTTCAGATTAATCATGTGCAATTTTGACACATCTCAAACCTGAGAACTAACTTTTAATGGATGTTTAAGGGCATAATTCACTCAATACTGAATATTTATCAGCTTGTAAGATTCATCCATTTCCAGACAAGACTATTTTTGTCTATAAAAAAAGAGCAGGCAAGGCAAGAATCCGTGGTTACCAACAGCTTTGCAGCTCAGATAGAGCATGGATACCGCAAAACTCTTCATGAACGTCAGTAACCAGAGCTACTTTTGTTACAAAGTTGTATAAAACTCCATAAGAAAAGCATTAGTGATGGAGACTGGCGTGTCCATTTCATGTTGTAACCTGCATTGTTCAAGTGCAATGGTTATGTCGTAATGTtgaaaatttttttcaaaatgtctaTTGACAAAAAATCCAGTAACTCCCCTTAGACTcccactgtgtttgttttacagtaaaatgtaaTTACACACTGACTACAAAAACAATCCCAATGGCAAAGAATTAGTTTTTGGGACTTTCATATATTGTTAAATATACTTTTCATGAGTCATTACTCAGATTTACAGTCAATTCAGTAGTGACACATTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU322859 True 3511 lncRNA 0.40 2 20716511 20737500

Neighbor

gene id symbol gene type direction distance location
pcyox1 pcyox1 coding upstream 5485 20702515 ~ 20711026 (+)
gmcl1 gmcl1,LOC107688092,LOC106564898 coding upstream 18848 20684972 ~ 20697663 (+)
snx24 snx24 coding upstream 46024 20663103 ~ 20670487 (+)
loxa lox,LOC108277371,LOC107562574 coding upstream 55416 20647807 ~ 20661095 (+)
mpx LOC100335032 coding upstream 92570 20608815 ~ 20623941 (+)
stard7 stard7,LOC107713384,LOC107687872 coding downstream 12673 20750173 ~ 20761668 (+)
smarcad1b LOC108277297 coding downstream 106825 20844325 ~ 20864250 (+)
ska1 ska1 coding downstream 127065 20864565 ~ 20870543 (+)
slc2a11l LOC108277148 coding downstream 133877 20871377 ~ 20880169 (+)
nt5c2l1 nt5dc4,LOC108435390 coding downstream 146527 20884027 ~ 20901267 (+)
G272427 NA non-coding upstream 56217 20565033 ~ 20660294 (+)
G272426 NA non-coding upstream 152447 20562176 ~ 20564064 (+)
G272361 NA non-coding upstream 251465 20409723 ~ 20465046 (+)
G272360 NA non-coding upstream 268833 20442699 ~ 20447678 (+)
G272347 NA non-coding upstream 406635 20309591 ~ 20309876 (+)
G272470 NA non-coding downstream 11861 20749361 ~ 20749647 (+)
G272770 NA non-coding downstream 190122 20927622 ~ 20931583 (+)
G272803 NA non-coding downstream 252843 20990343 ~ 20990551 (+)
G272940 NA non-coding downstream 742400 21479900 ~ 21492672 (+)
LOC113544190 NA non-coding downstream 750612 21488112 ~ 21492076 (+)
G272408 NA other upstream 173557 20540325 ~ 20542954 (+)
G272374 NA other upstream 287368 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 317564 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 773006 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 867685 19848755 ~ 19848826 (+)
LOC113544125 LOC100304632 other downstream 622019 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 738587 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 1185051 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 1631756 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 1884928 22622428 ~ 22665570 (+)

Expression


Co-expression Network