G272770


Basic Information

Item Value
gene id G272770
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20927622 ~ 20931583 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU323226
AGTCACGTTTATTTACAGCAGAATCCTGACCGGATGAAGGGGAGCAGGTTAAAGGAGATGAAAACGTTTAGGTACAGCGCGTCAGGATCCATAGGTCACTACACagttcttaatttatttattttttttaaatccacttttATACAGAATCCTTTTGGCCGTAACGCAGATGTGCCAACGGAGCCCAGCGCCCTCTGCTGGCAGGGAGTGAAGAGGGATGggaaaaagtataaaataaaacactaagaaaaatacaaataaggggataaaacaaacaaacaaaaaaaaaaaaacaaaacaaaaaggtggTGAAGCTtgtcataaaaaagaaaaccttttgAAAATGTTCAATGTTCAATCATTCCATGATTTCAGAGTTTCATGTCCATAAGGGGGGCTGGCAGGGGATCAAGAAAGGGATTGTGGGTAAGTCGACATCTGTGATGCTCCGAATGTGCCGTGGTCAGGACAATGTTCTCTGCCTGGCGTCTGTGAGGTCCCTGTCCCTGTCTGAGATACAGGGCCCGAGGCGTCCAAACCCTCCGAGGATCTTTGTAGCCCGAGCACTTGTGTTTATGTTGTTGTGCAATCATACGCTCGTTCGTTCGCTGAAAGCCTGCGTGTGCGCGAGTGTTGCAGTGCTGCCGTGGGCTTCCTGAACGACGACACACTGTACACTTCACATGCAAGGCCAGACAACTCACAGATTTAGAAATAATGAAACGGGTAAcaagtagaaaaaaataaaataaaataaaggagcGGAACTCAAGAAAATCTCGACAGACAAACCAGCAaacctcactgacacacacctgtcactcacacacaccagtcacaCACAATTCCAGTCTCTTAGGGCAAATAATTGTCaagaaaatactaaaataaaggGAGAATTAGAACGCAAGCCACTAGGCATGTGCCAGTTATCACTTTTACAACATATTGTGACAATTTAATGCACAAATTACTGTTATCTTGGATTCTTACTTCAGGGAGATTTGAAAGAGCCGTCTCAAAGAAGGGAATCCCATAATTGGGTTAGGAATTTGTTCGGATAATACTGGCACATGCCTACAAGCCACACCGCTTCTTAACGACAACCGTAATCAGCGCTGAGCCCGTCGACTGTAAGAGCACCATTCTGAACAGACTTAACAGAGGTAATGCCATACATTCAGTTcagtcacacagacacacacacacacacacacacacacacacacacactctttCTCTAGCATACTGAAGCCCCTCTTGAAGCCGTGCCACCCTTTAGTCCCTCCTGCTAGTTACCTGCAgcttaaaggaatagtttggtGAAAAGTTAGTTCTGAAACCATGAAGCCAGTGTAGCGTCGTattagaaatgaaaatgataagtcattaataataataataataataataataataataataataatacgctacaggccatgctgttataggaaaataatccacactgggTGGTGGGATTTTCAATTCATCAATGAGCAGGACGTCATCCTTTTGAACTGTTTGtacttatatttaattatataaaacatctATGAGACaagtaagttcctgttctctcttacgttatagcagctataaacagtcattccctcaccagcttctcttctgaagttaaaaagacaaaaaaacacagcttatgttagagaaaccagaaagcacaaaagtcctctgtcctgaagacttactgattgttacaaaatgctggcactggagactccttccaataaatgttacataaacatctctaTACGGAAATAtgcttttctttattaaataataactttttcttaatccatttattattagatgtGCTTTCACAGCTATTAGTCTGTTTGCTGAATTCAAATCAGAGTGAAATGTGaaacttttggtttgttttgttttctcactgTACGCAACTGAGTAAACCAGATAACAACGGGTGTGTAGcgctgaggaaaaaaagaaaacgtgtAAAgcgctctttctttctttaattggtcagaaatacgGTGCTGAGAAATTAAACAGAACTttactgtgtggtgtgtgtagaaTTCACAAAACATaatctgagcacacacacacacacacacaacagctgcATTCAATATAttactagataattatataaacaactatttgaaaacattttgtgtatcgtCTCTGggatttattttctctttttgttcagtCAAAATCTCCAGAGCACATCGCATTTCCgcagcgctacagctctgtcctttgccATGGTTTGCAACTCATTTTAGCAGTTCAtgtctacagaaaaaaaaacatcaaaaccgCAATTTAAAACTCACTTCCTGCCGTTGGATCGAATCGACCTCGAAGAGTTTGACTGGAAGCAGACAGAAATCACCTCGCTGAGATGGTCTCGGAACCGGactaaagaagaaaacacactaGAGTTCGATTCAGGtggactaaacactgcatatgtgaaagcaccctcaGATTACATGAAGCGTCGATCATACgagtgaatgaactgttactatagaaacgattacatgtcagaacgagtgcattaatataaacctgttactGATTTATTAATCGGCAAGCTTCTGAAGAATTCATCAGTGTGGTGGTATAAAGCAGACTAGGACACGGTGAGACTTAGTGTgatctataaaaatgaacaaaacttgAACACATCATCTTGGGAATCCTGCCCATGGCCTTCCATTATCTCAGaactccaaaaaacaaaacaaaacaaacaaacaaaaaaaaaaagctgcaaacATCAGACCCCAAACATGTCTTTGGGGTGAGAAATCGTCCAAATTTCACCAAACTATTTCTTTAAACGAGGGAACATGGTCGTAAAAAGTGTATATGGTGCGactttcagagaaaaaaaaaaaaactgcatttcccATCAACCTCTCACTACAAATCCACCTAAAAAGCAACAAAGGGAAAAGCACGAAAAAAACcctcactcacacagacacacaattcATATTTGatcacacagacatacacacttGCACCCCAACATGATAACCCTAATACAtgtgtacacatatatacatagagGGGCGTGGCCTTCCCAACGGTAAGGACACACTCCGTTTCATAATGCGTTGTTTCTGTATATGCCAAGAATAAAAtctttctaaataaaatacacatatCTGTAAAGGGGAAAGGGGATGGGCTTataagagaggaggagaggacgcaaaagagagagagagagaagcaggaaAGCGTCTGTGgccttgtgtgtatgtgtgtgtgtgtgtgtgtatgtgtgcgcatgTTGGTCCCCTCAGGGTCATCACTGTCCTAAGCTGAGACTTTCTCAGCGTCTTGTCCGTggttcaaaaaacaaaactaaacaaaaaacaaacaaaaaaaaaaaccccaaaacaaacaaacaaaaaacaaaacacaccaacagTCTGCAAATCCATAATGACGccgattagaaaaaaaataatcacgtGGAGCTCATCGAGCACCAGTTGTGTCCCGTAAAGACAAGTCTATTAAGGAGTGGCCTCTCAGTCCAACAGGGACCAATGggggagatgagagagagaagagagagagagagagagagagagagagagagagaggaaacagaagaGGTAATAAAAAGAGAAGGTGAGTGAATGTGCTGAGCAGAATCCATCTGGCAGTGAAGTCAAGCTGCTCTCCATCTGATCCATGAATAAGGAGATGAGAAGACGTGTGCGACTCCCCCCTCCCATGTTCCTGCTCTccctctccctgtgtgtgttggGGATGAGTTGAAGTGAATGCTGCCCGTCTCGCTCATGGCCATCATACGTCCATGAACCGGGAGCTGCTGGACTTGGCATGGAAAGGCTCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU323226 True 3873 lncRNA 0.41 2 20927622 20931583

Neighbor

gene id symbol gene type direction distance location
nt5c2l1 nt5dc4,LOC108435390 coding upstream 26355 20884027 ~ 20901267 (+)
slc2a11l LOC108277148 coding upstream 47453 20871377 ~ 20880169 (+)
ska1 ska1 coding upstream 57079 20864565 ~ 20870543 (+)
smarcad1b LOC108277297 coding upstream 63372 20844325 ~ 20864250 (+)
stard7 stard7,LOC107713384,LOC107687872 coding upstream 165954 20750173 ~ 20761668 (+)
gnaz gnaz,LOC107555529 coding downstream 28479 20960062 ~ 21049972 (+)
rab36 rab36,LOC108427235,LOC107555516,LOC103042607 coding downstream 131102 21062685 ~ 21074114 (+)
depdc5 depdc5,LOC107686465,LOC107713378 coding downstream 143070 21074653 ~ 21106826 (+)
ywhah ywhah,LOC107562560,LOC107713377,LOC107555530,LOC107688000 coding downstream 177075 21108658 ~ 21115104 (+)
slc5a1 slc5a1,LOC107713298,LOC107744177,LOC107688629 coding downstream 197703 21129286 ~ 21147233 (+)
G272470 NA non-coding upstream 177975 20749361 ~ 20749647 (+)
G272450 NA non-coding upstream 190122 20716511 ~ 20737500 (+)
G272448 NA non-coding upstream 202428 20659603 ~ 20725194 (+)
G272427 NA non-coding upstream 267328 20565033 ~ 20660294 (+)
G272426 NA non-coding upstream 363558 20562176 ~ 20564064 (+)
G272803 NA non-coding downstream 58760 20990343 ~ 20990551 (+)
G272940 NA non-coding downstream 548317 21479900 ~ 21492672 (+)
LOC113544190 NA non-coding downstream 556529 21488112 ~ 21492076 (+)
G273248 NA non-coding downstream 1031081 21962664 ~ 21962867 (+)
G273258 NA non-coding downstream 1050396 21981979 ~ 21982191 (+)
G272408 NA other upstream 384668 20540325 ~ 20542954 (+)
G272374 NA other upstream 498479 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 528675 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 984117 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 1078796 19848755 ~ 19848826 (+)
LOC113544125 LOC100304632 other downstream 427936 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 544504 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 990968 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 1437673 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 1690845 22622428 ~ 22665570 (+)

Expression


Co-expression Network