G272803


Basic Information

Item Value
gene id G272803
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20990343 ~ 20990551 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU323264
cttagggtcattgtcatgctggaaagtCCAAGAGCATCCGTGCAGAAGAATGCAAATTTGGATATCTTTTTGTATCCTTTTCCATCTTTATAAAGTTCCACTACCTTGTTACACAGGTATTTTGACAGTTCTTTTCTGCTCCCCATGGCTCAGTATCTACCCTGCTCAGGGCATCCATGTGAGAGCTAACAAACTAGACACTAATTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU323264 True 209 lncRNA 0.42 1 20990343 20990551

Neighbor

gene id symbol gene type direction distance location
nt5c2l1 nt5dc4,LOC108435390 coding upstream 89076 20884027 ~ 20901267 (+)
slc2a11l LOC108277148 coding upstream 110174 20871377 ~ 20880169 (+)
ska1 ska1 coding upstream 119800 20864565 ~ 20870543 (+)
smarcad1b LOC108277297 coding upstream 126093 20844325 ~ 20864250 (+)
stard7 stard7,LOC107713384,LOC107687872 coding upstream 228675 20750173 ~ 20761668 (+)
rab36 rab36,LOC108427235,LOC107555516,LOC103042607 coding downstream 72134 21062685 ~ 21074114 (+)
depdc5 depdc5,LOC107686465,LOC107713378 coding downstream 84102 21074653 ~ 21106826 (+)
ywhah ywhah,LOC107562560,LOC107713377,LOC107555530,LOC107688000 coding downstream 118107 21108658 ~ 21115104 (+)
slc5a1 slc5a1,LOC107713298,LOC107744177,LOC107688629 coding downstream 138735 21129286 ~ 21147233 (+)
rnf208 rnf208,si:dkey-106l3.6,LOC107688056,LOC107744121,LOC107713373,LOC107686464 coding downstream 160818 21151369 ~ 21167542 (+)
G272770 NA non-coding upstream 58760 20927622 ~ 20931583 (+)
G272470 NA non-coding upstream 240696 20749361 ~ 20749647 (+)
G272450 NA non-coding upstream 252843 20716511 ~ 20737500 (+)
G272448 NA non-coding upstream 265149 20659603 ~ 20725194 (+)
G272427 NA non-coding upstream 330049 20565033 ~ 20660294 (+)
G272940 NA non-coding downstream 489349 21479900 ~ 21492672 (+)
LOC113544190 NA non-coding downstream 497561 21488112 ~ 21492076 (+)
G273248 NA non-coding downstream 972113 21962664 ~ 21962867 (+)
G273258 NA non-coding downstream 991428 21981979 ~ 21982191 (+)
G273226 NA non-coding downstream 1047288 22037839 ~ 22038149 (+)
G272408 NA other upstream 447389 20540325 ~ 20542954 (+)
G272374 NA other upstream 561200 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 591396 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 1046838 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 1141517 19848755 ~ 19848826 (+)
LOC113544125 LOC100304632 other downstream 368968 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 485536 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 932000 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 1378705 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 1631877 22622428 ~ 22665570 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G6225 NA non-coding CM030121.1 CM030121.1 36526668 ~ 36539067 (+)
mexican tetra (Astyanax mexicanus) G5640 rab34a,LOC103022556,LOC108443499,LOC107758713,LOC107672399,LOC107657101 non-coding NC_035897.1 CM008300.1 22949827 ~ 22951675 (+)