LOC113543995


Basic Information

Item Value
gene id LOC113543995
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 21476087 ~ 21478880 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU323423
CTCTCCACCGGTTACCATGATGATCCTCCGCTCTGTCCTCCTGCTGGTACTTGGCATCAACTCTGCTCAGGCACTTTACTACAGGGCACTGTGGCAGTTCAGACGTATGATCATCTGTGCCATACCTACTAGCTGGCCATTCCTGGACTATGGAAACTATGGCTGCTACTGCGGCTGGGGTGGTTCAGGCACTCCCGTCGATGACTTGGACAGATGCTGTCAGGTTCATGACAACTGTTATGGTGAAGCCTTGAAGCATAAAGCATGCTGGCCTATCTTTGACAACCCTTACACAGAGATCTATGCCTACGGATGTGACAAAGCCACAAAGAAAATCACCTGCAAAAAAAACAACACAGTTTGTGAGATGTTCATTTGTGAGTGTGACCGGAAGGCTGCTGAGTGCTTTTCTGCATCTAAATACAATAAGGAACATAAGAGACTGCCTAAGAGTCGctgcaaaaagaaatgaaaaagatctGTTCCCATGAAACAATTTGAAGTGTATGCTCTCTGTTGTCAGATATTGAAAATCAGTTTGAAGTAAACACTCCAAATGAGAATTACCGTCACCTCTGGTGCTTGAAAATCAATTAGAGAAGACTCCAAATTAGAATTACCCACACCCCTGCTGCTTTTGAATATAACAGCTTAGATGTGTCTTATTCCCATATACAACTGGAAAGGTACTTTCAAAAACAGCATGTAGTTCCATCATGTACATACCATTTCTAATAAAGTTGTTTCTAAACCTGCATGTCCATCTTCCTTGGGATAATACCACAGCTCATAGGCATGAGTCAACCATTAACTGATCTTCAAAATCAAATTATCATAGCCATATACAAATTTGTGAGCAAATCCTACCCTAACACCACCTATGCTTCAGGAAATAAGGTCAATTTGAACATGCCAAGTTAATTGGAATTGTGACCTATAATTTTTGGCCTGAGAACTTGTGTAATAAACCTTGACTGTATAAGAAaaatctcatgaaaaaaaattgtctaaAAGATTAACTTAATTTTTGATCAAG
>XM_026942559.2
CATTGAGATGTGAGGCAGTGTAAATCTCTCCACCGGTTACCATGATGATCCTCCGCTCTGTCCTCCTGCTGGTACTTGGCATCAACTCTGCTCAGGCACTTTACTACAGGGCACTGTGGCAGTTCAGACGTATGATCATCTGTGCCATACCTACTAGCTGGCCATTCCTGGACTATGGAAACTATGGCTGCTACTGCGGCTGGGGTGGTTCAGGCACTCCCGTCGATGACTTGGACAGATGCTGTCAGGTTCATGACAACTGTTATGGTGAAGCCTTGAAGCATAAAGCATGCTGGCCTATCTTTGACAACCCTTACACAGAGATCTATGCCTACGGATGTGACAAAGCCACAAAGAAAATCACCTGCAAAAAAAACAACACAGTTTGTGAGATGTTCATTTGTGAGTGTGACCGGAAGGCTGCTGAGTGCTTTTCTGCATCTAAATACAATAAGGAACATAAGAGACTGCCTAAGAGTCGctgcaaaaagaaatgaaaaagatctGTTCCCATGAAACAATTTGAAGTGTATGCTCTCTGTTGTCAGATATTGAAAATCAGTTTGAAGTAAACACTCCAAATGAGAATTACCGTCACCTCTGGTGCTTGAAAATCAATTAGAGAAGACTCCAAATTAGAATTACCCACACCCCTGCTGCTTTTGAATATAACAGCTTAGATGTGTCTTATTCCCATATACAACTGGAAAGGTACTTTCAAAAACAGCATGTAGTTCCATCATG

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0006040 amino sugar metabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko00100 Steroid biosynthesis
ko04976 Bile secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU323423 True 1036 TUCP 0.40 4 21476112 21478880
XM_026942559.2 False 744 mRNA 0.44 4 21476087 21478563

Neighbor

gene id symbol gene type direction distance location
LOC113543961 NA coding upstream 2969 21468412 ~ 21473118 (+)
LOC113523962 pla2g1b coding upstream 9944 21462543 ~ 21466143 (+)
LOC113544185 pla2g1b coding upstream 24014 21447235 ~ 21452073 (+)
prkab1a prkab1 coding upstream 30823 21435902 ~ 21445264 (+)
phf24 phf24 coding upstream 51240 21393821 ~ 21424847 (+)
ppp2r2ab ppp2r2a,ppp2r2ab,LOC108277296,LOC108427249,LOC107744137,LOC107720666,LOC107678035,LOC107687801 coding downstream 793186 22272066 ~ 22289033 (+)
bnip3lb bnip3lb,LOC108277095,LOC108427248,LOC103036208,LOC107687791,LOC107561399,LOC107678042 coding downstream 812201 22291081 ~ 22310553 (+)
dpysl2b dpysl2b,dpysl2,LOC108277094,LOC108427246,LOC107687778,LOC107678023,LOC107560521 coding downstream 836414 22315294 ~ 22351716 (+)
igsf9a LOC108277156 coding downstream 901040 22379920 ~ 22426821 (+)
vsig8a LOC108277295 coding downstream 1228081 22706961 ~ 22766275 (+)
G272803 NA non-coding upstream 485536 20990343 ~ 20990551 (+)
G272770 NA non-coding upstream 544504 20927622 ~ 20931583 (+)
G272470 NA non-coding upstream 726440 20749361 ~ 20749647 (+)
G272450 NA non-coding upstream 738587 20716511 ~ 20737500 (+)
G272448 NA non-coding upstream 750893 20659603 ~ 20725194 (+)
G272940 NA non-coding downstream 1020 21479900 ~ 21492672 (+)
LOC113544190 NA non-coding downstream 9232 21488112 ~ 21492076 (+)
G273248 NA non-coding downstream 483784 21962664 ~ 21962867 (+)
G273258 NA non-coding downstream 503099 21981979 ~ 21982191 (+)
G273226 NA non-coding downstream 558959 22037839 ~ 22038149 (+)
LOC113544125 LOC100304632 other upstream 114343 21359519 ~ 21361744 (+)
G272408 NA other upstream 933133 20540325 ~ 20542954 (+)
G272374 NA other upstream 1046944 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 1077140 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 1532582 19853554 ~ 19943505 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 443671 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 890376 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 1143548 22622428 ~ 22665570 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other downstream 1570932 23049812 ~ 23145567 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other downstream 1765680 23244560 ~ 23274653 (+)

Expression


Co-expression Network