G272940


Basic Information

Item Value
gene id G272940
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 21479900 ~ 21492672 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU323425
GTTGGGAAGGCTTGGCAAGAGAGACTGAGGGACTGGCAGCAGTTTGTGGGATAGGGGAGAACTGTGTAGATGTGGGAAATGCTGGGGAATGCACATTATTCTGGGACATGGCAGAAGTTCCAGCACTTTGGTTcagaaatggcaaaatattgttGACTGTTTGGGTATCAGAGCTCAGAGATGGAGAAATTGCTGTATTCAGTAGCCAAGTGCGGAATCCAGAAGGATTTATCATATGCCATTTTGCAGCCTGATAGGTGCCCTGCACCCGAGATGTAGAAGCAGAGTGACCCACCAAAGCTTGTGTTGTGGTGTTAGGCTGAAATGTCTGGTTCTGGAATCCAGAGATTTGGTTTGTGGTGACCACAGACTGGGAGGAGGATGGAATGCTCTGATCCTGTGAAGTCATATTTCTGCCAGAGGTTGGGCCTTGATACAATGTTGAAGCACCAGAGGACTGAGCCTGTGACATAGAAGCAGAAATGCCTGTAGAAACCTGTGCTGTAGAGCTAGGCTGGTATAATGACTGGGTCTGGAATCCATACACTTGGGAAGAGGATGGAATATTCTGACCCCATAAAATGTTGTACCATTTAGCAGGTCTTGAAGATTCAGCCCCATAGCTGCCCTGAGCCTGAAATGAAGATGAAGACTGGCTTTCCACAACCTGTGTTGTGAGACTAGGCTGGTATGAATGGCTCTGGAATCCAGAGATCTGTTCTGTGTTGACTGCAGTGTGGGATGAAGACAGCATTCTCCGATTCTGTGAAGTTAGATAACTGCCAGAGGGTAGACCTGTATACAATGTTGAAGCACCTGAGGATTGAGCTTGCGGGGTAGATGCAGACTGGCCTGCCAAAACCGGTGTTGTGGAGCTAGGCCGGTATAAAGACTGGCTCTGGAATCCAGAGATTTGGTTTGTGGTGACCACAGATTGGGAGGAGGATGGAATGCTCTGACCCTGTGAAGTCAGATACCCACCAAAGGATAGACCTTGATACAATGAAGCACCTGAGGCCTGAGCCTGAGGGGTAGAAGCAGACTGGCCTGCCAAAACCTGTGTTGCAGAGCTAGGCTGGTATGATGACTGAGTCTGGAATCCAGAGATTTGGTTTGTGGTGATTGCAGACTGAGAAGAGGATGGAATTGTCTGACCCTGTAAAATGCTATACCATTTAGCATGTCCTGAGGATTCACCCCCATAGCTGCCCTGAGCCTGAGATGTAGAAGCAGACTGGCTTGCCGAAACCTGTGCTGTGGTGCCAGGCTGGTATAATGGCTGGGTCTGGGATCCAGATACCTGGTTTATGTTGGCTACAGACTGGGAGTAAGGTATAATTCTCCAGTCCTGTGAAATGTTGTACCCGCTGGAGGCTTGCCCTTGGTACAATGTTGATTCACCTGAGGACTGAGCCAGAGATGTAGCAGACTGGCCAGTCAAAACCTGTGTTGTGGAGCTTGGCTGGTATAATGATTGGGTCTGGGATCCAGATACCTGGTTTGTGGTACCTGCAGACTGGGAAGAGGATGGTCTCTGGAATCCAGGGGCATACTGAGCTTTTACAGGCCAAGATTGAGATAGCGAAGGGCCACAGTTATTAGGCTTGAGAGACTCGTACCAATAAACTCTTGAAGACTGAGCTGTGTAGTTATTCTGGCGTTGAATGGTAGGAGCAGCTTGACTATGAGCATTTAGTACAGGTTTACCATGAGCAGCACCACCAGAAGACTGCACAAAACTAGAATCATGTTGAGCAGTTTGGACCTCAGAAGTAAGCATAACACTACTAGaatttcctcctcctcctccaacaTTTCCATTTGCACCTTTTCTGGACAGTAGCTGAAAAGGTTGAACAGGTGTAGCAAGATGAAAATTTTGGTTCCCTGTGACATTAGAATGTCCAGCTTGCCAATCAATGATAGATGTTCTATTCCACACTGAATCCATTTATATGTCCACAAAGAACCAAAGCAATGGAAAGTAGTTGGagtctgaaagaaaaaaaaaacaaatcccaTACTCAAAAttgtgtggagaaaaaaaaacagggaaacaCTAAATGCATACCTCTTCATTGCCCATGACATCTCAAAATATGATTAACAGAAGGGGCCCTGACTACTAAAATGTATATGGTACACTATGCCCAAATACTAAAACCAGCACCAACCTAAAAACGCTACTTATATAACGAG
>TU323426
GTTGGGAAGGCTTGGCAAGAGAGACTGAGGGACTGGCAGCAGTTTGTGGGATAGGGGAGAACTGTGTAGATGTGGGAAATGCTGGGGAATGCACATTATTCTGGGACATGGCAGAAGTTCCAGCACTTTGGTTcagaaatggcaaaatattgttGACTGTTTTTGTCTGGGTATCAGAGCTCAGAGATGGAGAAATTGCTGTATTCAGTAGCCAAGTGCGGAATCCAGAAGGATTTATCATATGCCATTTTGCAGCCTGATAGGTGCCCTGCACCCGAGATGTAGAAGCAGAGTGACCCACCAAAGCTTGTGTTGTGGTGTTAGGCTGAAATGTCTGGTTCTGGAATCCAGAGATTTGGTTTGTGGTGACCACAGACTGGGAGGAGGATGGAATGCTCTGATCCTGTGAAGTCATATTTCTGCCAGAGGTTGGGCCTTGATACAATGTTGAAGCACCAGAGGACTGAGCCTGTGACATAGAAGCAGAAATGCCTGTAGAAACCTGTGCTGTAGAGCTAGGCTGGTATAATGACTGGGTCTGGAATCCATACACTTGGGAAGAGGATGGAATATTCTGACCCCATAAAATGTTGTACCATTTAGCAGGTCTTGAAGATTCAGCCCCATAGCTGCCCTGAGCCTGAAATGAAGATGAAGACTGGCTTTCCACAACCTGTGTTGTGAGACTAGGCTGGTATGAATGGCTCTGGAATCCAGAGATCTGTTCTGTGTTGACTGCAGTGTGGGATGAAGACAGCATTCTCCGATTCTGTGAAGTTAGATAACTGCCAGAGGGTAGACCTGTATACAATGTTGAAGCACCTGAGGATTGAGCTTGCGGGGTAGATGCAGACTGGCCTGCCAAAACCGGTGTTGTGGAGCTAGGCCGGTATAAAGACTGGCTCTGGAATCCAGAGATTTGGTTTGTGGTGACCACAGATTGGGAGGAGGATGGAATGCTCTGACCCTGTGAAGTCAGATACCCACCAAAGGATAGACCTTGATACAATGAAGCACCTGAGGCCTGAGCCTGAGGGGTAGAAGCAGACTGGCCTGCCAAAACCTGTGTTGCAGAGCTAGGCTGGTATGATGACTGAGTCTGGAATCCAGAGATTTGGTTTGTGGTGATTGCAGACTGAGAAGAGGATGGAATTGTCTGACCCTGTAAAATGCTATACCATTTAGCATGTCCTGAGGATTCACCCCCATAGCTGCCCTGAGCCTGAGATGTAGAAGCAGACTGGCTTGCCGAAACCTGTGCTGTGGTGCCAGGCTGGTATAATGGCTGGGTCTGGGATCCAGATACCTGGTTTATGTTGGCTACAGACTGGGAGTAAGGTATAATTCTCCAGTCCTGTGAAATGTTGTACCCGCTGGAGGCTTGCCCTTGGTACAATGTTGATTCACCTGAGGACTGAGCCAGAGATGTAGCAGACTGGCCAGTCAAAACCTGTGTTGTGGAGCTTGGCTGGTATAATGATTGGGTCTGGGATCCAGATACCTGGTTTGTGGTACCTGCAGACTGGGAAGAGGATGGTCTCTGGAATCCAGGGGCATACTGAGCTTTTACAGGCCAAGATTGAGATAGCGAAGGGCCACAGTTATTAGGCTTGAGAGACTCGTACCAATAAACTCTTGAAGACTGAGCTGTGTAGTTATTCTGGCGTTGAATGGTAGGAGCAGCTTGACTATGAGCATTTAGTACAGGTTTACCATGAGCAGCACCACCAGAAGACTGCACAAAACTAGAATCATGTTGAGCAGTTTGGACCTCAGAAGTAAGCATAACACTACTAGaatttcctcctcctcctccaacaTTTCCATTTGCACCTTTTCTGGACAGTAGCTGAAAAGGTTGAACAGGTGTAGCAAGATGAAAATTTTGGTTCCCTGTGACATTAGAATGTCCAGCTTGCCAATCAATGATAGATGTTCTATTCCACACTATGGGGTATAAAATTAAACCAGTTTTAGATTATAAAGTTACAACTACAGACATGCATaccttacatttaaaacatttttaactgcTCACCACTGAATCCATTTATATGTCCACAAAGAACCAAAGCAATGGAAAGTAGTTGGagtctgaaagaaaaaaaaaacaaatcccaTACTCAAAAttgtgtggagaaaaaaaaacagggaaacaCTAAATGCATACCTCTTCATTGCCCATGACATCTCAAAATATGATTAACAGAAGGGGCCCTGACTACTAAAATGTATATGGTACACTATGCCCAAATACTAAAACCAGCACCAACCTAAAAACGCTACTTATATAACGAG
>TU323428
GTGCATTcttcatttattacattataaatattcagacaaGCATTCAGGCAACCAATAAACCACCACAAATGAGCAAATATTCAGGAATTCACCAGTCTGCAGCAAAAGAAGCACTCAATATTTAATAGATTTGAGCTGGTCAGGAGGGCCTCCATTACAGAATGATAGTTTGCATTGTAGAGATGTTGAGAAAAGCTGCAACTAGTTGAGCTCACACTTACAGCACTATTGGAAAAGCTTGGAACACTGAATGCTGAAGAGAAACTGGTTTGCCTTTTTCAAAAGAGGTCCACGATTTCTTGGTTCACAGGTTTTCACTCTGTGCACTCTGGCTTTAAACAAATTTGTTGTTTGCAGCTCCTTGAGAAGACATGCAGAAACCTAAAGGAAAATTACACACTGGGCTGTGTTGGTCATGTCGTACCTGGGGCAAAGCACCTTGGAAAGAAATGCCTGCAATATTCTGTGAAGCACCTTGAGAGGGTACAGCAGCATAAATGTCTGTGCCTTGAGATGTTGAAGCAACATGTGGGGAGGTTTGGCTGGTTGCTAGAGAGGCAATTCCACTCTGTACCATTGAGCCTTGCGTCTGTTGGGAAGGCTTGGCTAGAGAGACCGAGGGACTGGCAGCAGTTTGTGGGATAGGGGAGAACTGTGTAGATGTGGGAAATGCTGGGGAATGCACATTATTCTGGGACATGGCAGAAGTTCCAGCACTTTGGTTcagaaatggcaaaatattgttGGCTGATTTTGTCTGGGTATCAGAGCTCAGAGATGGAGAAATTGCTGTATTCAGTAGCCAAGTGCGGAATCCAGAAGGATTTATCATATGCCATTTTGCAGCCTGATAGGTGCCCTGCACCCGAGATGTAGAAGCAGAGTGACCCACCAAAGCTTGTGTTGTGGTGTTAGGCTGAAATGTCTGGTTCTGGAATCCAGAGATTTGGTTTGTGGTGACCACAGACTGGGAGGAGGATGGAATGCTCTGATCCTGTGAAGTCATATTTCTGCCAGAGGTTGGGCCTTGATACAATGTTGAAGCACCAGAGGACTGAGCCTGTGACATAGAAGCAGAAATGCCTGTAGAAACCTGTGCTGTAGAGCTAGGCTGGTATAATGACTGGGTCTGGAATCCATACACTTGGGAAGAGGATGGAATATTCTGACCCCATAAAATGTTGTACCATTTAGCAGGTCTTGAAGATTCAGCCCCATAGCTGCCCTGAGCCTGAAATGAAGATGAAGACTGGCTTTCCACAACCTGTGTTGTGAGACTAGGCTGGTATGAATGGCTCTGGAATCCAGAGATCTGTTCTGTGTTGACTGCAGTGTGGGATGAAGACAGCATTCTCCGATTCTGTGAAGTTAGATAACTGCCAGAGGGTAGACCTGTATACAATGTTGAAGCACCTGAGGATTGAGCTTGCGGGGTAGAAGCAGACTAGCCCGTCAAAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU323425 False 2199 lncRNA 0.46 3 21479900 21488039
TU323426 True 2298 lncRNA 0.46 2 21479900 21488039
TU323428 False 1460 lncRNA 0.46 2 21485151 21492672

Neighbor

gene id symbol gene type direction distance location
LOC113543961 NA coding upstream 6782 21468412 ~ 21473118 (+)
LOC113523962 pla2g1b coding upstream 13757 21462543 ~ 21466143 (+)
LOC113544185 pla2g1b coding upstream 27827 21447235 ~ 21452073 (+)
prkab1a prkab1 coding upstream 34636 21435902 ~ 21445264 (+)
phf24 phf24 coding upstream 55053 21393821 ~ 21424847 (+)
ppp2r2ab ppp2r2a,ppp2r2ab,LOC108277296,LOC108427249,LOC107744137,LOC107720666,LOC107678035,LOC107687801 coding downstream 779394 22272066 ~ 22289033 (+)
bnip3lb bnip3lb,LOC108277095,LOC108427248,LOC103036208,LOC107687791,LOC107561399,LOC107678042 coding downstream 798409 22291081 ~ 22310553 (+)
dpysl2b dpysl2b,dpysl2,LOC108277094,LOC108427246,LOC107687778,LOC107678023,LOC107560521 coding downstream 822622 22315294 ~ 22351716 (+)
igsf9a LOC108277156 coding downstream 887248 22379920 ~ 22426821 (+)
vsig8a LOC108277295 coding downstream 1214289 22706961 ~ 22766275 (+)
G272803 NA non-coding upstream 489349 20990343 ~ 20990551 (+)
G272770 NA non-coding upstream 548317 20927622 ~ 20931583 (+)
G272470 NA non-coding upstream 730253 20749361 ~ 20749647 (+)
G272450 NA non-coding upstream 742400 20716511 ~ 20737500 (+)
G272448 NA non-coding upstream 754706 20659603 ~ 20725194 (+)
G273248 NA non-coding downstream 469992 21962664 ~ 21962867 (+)
G273258 NA non-coding downstream 489307 21981979 ~ 21982191 (+)
G273226 NA non-coding downstream 545167 22037839 ~ 22038149 (+)
G273473 NA non-coding downstream 1069432 22562104 ~ 22562325 (+)
G273600 NA non-coding downstream 1308409 22801081 ~ 22840120 (+)
LOC113543995 NA other upstream 1020 21476087 ~ 21478880 (+)
LOC113544125 LOC100304632 other upstream 118156 21359519 ~ 21361744 (+)
G272408 NA other upstream 936946 20540325 ~ 20542954 (+)
G272374 NA other upstream 1050757 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 1080953 20398280 ~ 20398947 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 429879 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 876584 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 1129756 22622428 ~ 22665570 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other downstream 1557140 23049812 ~ 23145567 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other downstream 1751888 23244560 ~ 23274653 (+)

Expression


Co-expression Network