G273226


Basic Information

Item Value
gene id G273226
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 22037839 ~ 22038149 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU323778
aaaaaaaaaaaacaaattgaggtttgtttaaatgttaactaaatacaCTGGCATTGGCTAATGTTTATTCAATCCATTGCTACAAATAAGTTGgggtgaatgaaaaaaaaaaattcaattaccGCATGtctaaatatctaaatgttGATAAATTACTGAATGCTGGTCTGAaggtataaatattaaaatatgtataaatattaaatttgttttagtCCTGAATTTTGcaaattacaaactgcaaaCGTTCATTAAGCTGGAAAGTGTTGGCTTAATTTTACTCAGTGATGGTGTGAAAATTGGTTCATGCA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU323778 True 311 lncRNA 0.28 1 22037839 22038149

Neighbor

gene id symbol gene type direction distance location
LOC113543961 NA coding upstream 564721 21468412 ~ 21473118 (+)
LOC113523962 pla2g1b coding upstream 571696 21462543 ~ 21466143 (+)
LOC113544185 pla2g1b coding upstream 585766 21447235 ~ 21452073 (+)
prkab1a prkab1 coding upstream 592575 21435902 ~ 21445264 (+)
phf24 phf24 coding upstream 612992 21393821 ~ 21424847 (+)
ppp2r2ab ppp2r2a,ppp2r2ab,LOC108277296,LOC108427249,LOC107744137,LOC107720666,LOC107678035,LOC107687801 coding downstream 233917 22272066 ~ 22289033 (+)
bnip3lb bnip3lb,LOC108277095,LOC108427248,LOC103036208,LOC107687791,LOC107561399,LOC107678042 coding downstream 252932 22291081 ~ 22310553 (+)
dpysl2b dpysl2b,dpysl2,LOC108277094,LOC108427246,LOC107687778,LOC107678023,LOC107560521 coding downstream 277145 22315294 ~ 22351716 (+)
igsf9a LOC108277156 coding downstream 341771 22379920 ~ 22426821 (+)
vsig8a LOC108277295 coding downstream 668812 22706961 ~ 22766275 (+)
G273258 NA non-coding upstream 55648 21981979 ~ 21982191 (+)
G273248 NA non-coding upstream 74972 21962664 ~ 21962867 (+)
G272940 NA non-coding upstream 545167 21479900 ~ 21492672 (+)
LOC113544190 NA non-coding upstream 545763 21488112 ~ 21492076 (+)
G272803 NA non-coding upstream 1047288 20990343 ~ 20990551 (+)
G273473 NA non-coding downstream 523955 22562104 ~ 22562325 (+)
G273600 NA non-coding downstream 762932 22801081 ~ 22840120 (+)
LOC117599377 NA non-coding downstream 954393 22992542 ~ 22994797 (+)
G273683 NA non-coding downstream 999260 23037409 ~ 23038616 (+)
G273644 NA non-coding downstream 1009772 23047921 ~ 23062345 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other upstream 3842 21922551 ~ 22033997 (+)
LOC113543995 NA other upstream 558959 21476087 ~ 21478880 (+)
LOC113544125 LOC100304632 other upstream 676095 21359519 ~ 21361744 (+)
G272408 NA other upstream 1494885 20540325 ~ 20542954 (+)
G272374 NA other upstream 1608696 20423399 ~ 20429143 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 331107 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 584279 22622428 ~ 22665570 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other downstream 1011663 23049812 ~ 23145567 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other downstream 1206411 23244560 ~ 23274653 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other downstream 1243412 23281561 ~ 23386107 (+)

Expression


Co-expression Network