slc2a11l (LOC108277148)


Basic Information

Item Value
gene id slc2a11l
gene name LOC108277148
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20871377 ~ 20880169 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942450.2
GTTAGACATTCACAGGTTTGCTGCGTTAGAATTATCTCGCTGTTCACAGAGGAGACCAAACCAGATGGGTCACGAGACTCGTGGGAGAACTACACAGTGCAATGACGAGCCCCTTATCATCGCTGTTGAAGAACCCTGTGCTTGTTGGAGTCGTTTTGGTCACAGGTATTGGGGGGACGTTCCATTACGGCTTCCACATTTCTGTCCTCACCGCACCGTCAGCCTACATTAAAGAGCTGGTGAACAGCACATGCGTGCAGAGATATGGCCTCTCTCTGGAGCACTGGCAGCTCTCGCTTATCTGGTCCTTCATTGTCTCCACGTACTGCATCGGGGGTTTGTTAGGCTCCCTGTGTGTCGGGCGCATTGCTGTAACCTACGGCAGGAAGAGATGCCTCATGCTGAACAACGTGGTGGCCATCTGTGGAGCCTTGCTGATGGTGCTGAGCAAATCGGCACACTCGTTCGAGATGATCATGGTGGGACGCCTCGTCTACGGCATCAACTCAGgtgtgGCTCTGACGGCCCACACCATGTATGTGCTGGACTGCTCCCCCAAAAATTTAAGAGGTATGATCGGAGCGTCTGTGGGCAGCTTTGTCTCACTGGGGAAGTTTTTCGGCCAGCTGCTCGGCATCGGtgagATATTGGGAACAGAAACATTGTGGCCCTTCTTGCTGGCCTTTAGTGCCTTGACTGCTCTTCTGCAGTTTGTCTCTCTGTACTTCCTGCCTGAGTCTCCACGCTTCCTGCTCTTAGACCGGGGAGACAAATCTGCCTGTGAGAaggctctgcAGCAGCTGCGAGGTCCTCATGCTGACAACAGATTAGAGGTGGAGGAGATGCTGAAGGAGCGTGCGGCCCTGCAGGGTGTGAGGAACCACAGTGTGCTGGAGCTCCTGCTCGCCCGCTCCGTCCGCTGGCAGCTACTCACCGTCGTCACCAACTTCAtcacactgcagctgtgtggCATCAACGctGTTTATCTGTATGCGACTGATGTGTTCCGCGCAGCAGGAATCCCAGCACACAACTTACGCTATGTGACTATGGGGACGGGGTTGTGTGAATTCTCCACTGCAGTCATCTCTggGTTGGTGATTGAGCACACAGGGAAGAAGTTACTGATGGTTCGGGGTTATGTGGGCATGTCTGTTGCACTGCTCCTCCTCACACTCACGCTGTACCTGCAGGTGCACGTGTCATGGATGCCGTACTGCAGCATGGTGCTCATCTTCGTCTTCATCATCTCCTTCTGCAGCGGACCAGCTTGTATAACGGCGCCCCTGCCTGGTGAGCTTTTCACCCAGTCCTTTCAGTCAGCAGCGTTCACTGTGGCCTGCACTCTGAACTGGGCGGGGCTCTTCTTCGTGGGAATGGTGTTTCCTCTCATAGTGGAGCATTTAGACTATTTCTGCTTCCTCATCTTCTTCGCGTTCTGCTTTTCCACCGCTTTGTTCGTGTGGTTCAACGTACCCGAGACGAGGAACAAATCCCTAATGGAGATCACCGCCGAGTTCGAGAGGATGCACAGCAAAGCAAAACACTCAGAGACCAAACTCCAAGCTCTGCAAGATGCACACACGCAGATTGGACAGTGCACCAGACTCTGATTTCTGAACTGATTTCACAAACTGTAAACGTATGTAGGTGGTTTAGAAGGCAGATCAATAAAACACTATATGCTTtgagtgca

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942450.2 True 1696 mRNA 0.53 12 20871377 20880169

Neighbor

gene id symbol gene type direction distance location
ska1 ska1 coding upstream 834 20864565 ~ 20870543 (+)
smarcad1b LOC108277297 coding upstream 7127 20844325 ~ 20864250 (+)
stard7 stard7,LOC107713384,LOC107687872 coding upstream 109709 20750173 ~ 20761668 (+)
pcyox1 pcyox1 coding upstream 160351 20702515 ~ 20711026 (+)
gmcl1 gmcl1,LOC107688092,LOC106564898 coding upstream 173714 20684972 ~ 20697663 (+)
nt5c2l1 nt5dc4,LOC108435390 coding downstream 3858 20884027 ~ 20901267 (+)
gnaz gnaz,LOC107555529 coding downstream 79893 20960062 ~ 21049972 (+)
rab36 rab36,LOC108427235,LOC107555516,LOC103042607 coding downstream 182516 21062685 ~ 21074114 (+)
depdc5 depdc5,LOC107686465,LOC107713378 coding downstream 194484 21074653 ~ 21106826 (+)
ywhah ywhah,LOC107562560,LOC107713377,LOC107555530,LOC107688000 coding downstream 228489 21108658 ~ 21115104 (+)
G272470 NA non-coding upstream 121730 20749361 ~ 20749647 (+)
G272450 NA non-coding upstream 133877 20716511 ~ 20737500 (+)
G272448 NA non-coding upstream 146183 20659603 ~ 20725194 (+)
G272427 NA non-coding upstream 211083 20565033 ~ 20660294 (+)
G272426 NA non-coding upstream 307313 20562176 ~ 20564064 (+)
G272770 NA non-coding downstream 47453 20927622 ~ 20931583 (+)
G272803 NA non-coding downstream 110174 20990343 ~ 20990551 (+)
G272940 NA non-coding downstream 599731 21479900 ~ 21492672 (+)
LOC113544190 NA non-coding downstream 607943 21488112 ~ 21492076 (+)
G273248 NA non-coding downstream 1082495 21962664 ~ 21962867 (+)
G272408 NA other upstream 328423 20540325 ~ 20542954 (+)
G272374 NA other upstream 442234 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 472430 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 927872 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 1022551 19848755 ~ 19848826 (+)
LOC113544125 LOC100304632 other downstream 479350 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 595918 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 1042382 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 1489087 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 1742259 22622428 ~ 22665570 (+)

Expression


Co-expression Network