phf24 (phf24)


Basic Information

Item Value
gene id phf24
gene name phf24
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 21393821 ~ 21424847 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942484.2
ccattAGCAGCTCAGAGGAGCTTCTGCACCCAGTGACGTGCCAGTGCAGCCTCCTTTCATTCAACTTTTAATCTGGCGTTGCTTTGCATCACCTAGGCAGAGAGACCTGGAGGACTTCAGTACCGGAGCTGTCCACTCTCCACTCACACTCCACCCTTAGCGTCacgctctctcactcacacacacacacacacacacatacacacacacccttccaCACTTGAAGCAGAGCACTGACATGCCGGGTTGCAGTGCATGAAAAAGGAAGCGACAAAGTGCAAACGGAGTGCAGTTGAGTCTCAACGCAGCCATGGGCGTACTGATGTCCAAGAAGCAGCAGGTGGAGAAGGTTCAGAAATGCAATGCGGTGGTCTCAGCATTTCGCGATGGTCTGAAGAACCAGTCGAGTGTCCCTCAGGCTCAAAACAACTCCGAGAGCAAAGATGAGGCTCCGAACCAGCCAGAGTCTGATGAGTCTGGACGAAAAGAGGAGGACGGGAAACCGGGGCCATCCACTGCTCCACCCAAAGAGGAGAACAAAGCCAATCAGGAGGCCTGGGGCCGCTTACGGGATGGGAAAGGAGTAGAGCCTGAGGAGTTAAATAAAGTGCATCAGCTCACGCCACCAGCGTTTATAAGGCCGAAGAGGCAGCCGAATGACGATCAGCCCATACAGATCGAGCTCGGTCAGAGAGAGCAGccagtGAATGATGAGATGTGCGAGGTGTGCGAAGTGTGGACAGCGGACGATCTGTTCCCATGTCGGATATGTACAAGGGTGTTTCATGACGGTTGCCTGAAGGAAATTGGATACCTGCGTGCTGACACTGTACAGGAGATGAGAGAGACGGCTCACACCACCACGGGCTGGAGCTGCTACTACTGCGACAACGTAAACTTGCTCCTGACTGAAGAAGAGATGTACAGCCTAATGGAGACATTCAAGCAGTGCAAGATCATCCCAGAATCCTGCCTCGTCTCGGACGAGCTCCTTCAGTACAGGCACTTCGTGTCCAAGCAGCTGTTTGAGAAGGATCTGACAGACGATCAGGAGGAGGAGGTGCTGGCCCAGTTTGCTGCTCTTGACCCAGAGAAGAAGGGACAGATAGAGTGGTCAGATTTCCTGTATCATGAGTCGCTGTCAGTGCTGCAGAAATTTCGGACAGAGAACTCCCTGGTGCGTTTGCTCACGGCTAAAGAGCGTGACAGAGCGCGTGCAGTCTTCCAGAGTCTGGACCAGGATAAAGATGGTGTCATCACGGGTGGAGAGAGTCGGCGAGCTCAAACCTCATGGTTCCATAAGCACAGCAAAGAGCCTCAGTCCTGCAACGTCAGACTCAGGGGACTGTGTTCTCCTGCAATGAATATGGGCATCAGCCATGTAGGCCCGATTTCAGAGAGCAGTCCTGCCAGCTCAAGCAGTGACAAGAGCAGAGACAAGGCCATGGAGAAATACGacaacagGCCAGTGACATGGGACGCGTTCTTGCGTGAGAGCGCCATCTTCATCCTGGCTGCTCGACCCAACAGCAGCGCCATGCACATCCGTCTGCCCCTGTAATCCCGCCAAACCCAGGCTGGGGTCTGTGGGAAGGCAGCACAGTGTCCCCTAGACGTGTGGAAAAAATCCTGGCACTGAGAAAGGATGCGACACTCAGAGGCTGTATAAGCCATCGACGCACCCCGTCTCAAACAGAACACTATtacttctataacagcacactgaaaaaaagattttaggatttttttctgagatGTATCTCCGGCACATATTGTAAACCAACCAGTCGCAGCTCAGTGGTTGGCTGGGTGAGAAGATTGACAGCTATTTCTGTATGTAAGCTATAAGAAGCACTGCCATCTACTGTgtataaaatagcaaaaatgcACCACAGTATTAAACCATCAGCCTTTAAATATCCAGTCCTTAGTCACTTGTGATCAGAATACATGTGGGATAAAAGTGTTTGACCAGTTTTAAAGCCACTGTAAACAAGAAAACGACAAAACGACCATCAATGTAGTTGGATAGCACAAGCACTAACAGGAATGAAAGCTATctgcatatattatataatatatataagctatataaatgtgaatattaatatgtattatatatatgtgtatttattcctGAAcctcacagttttaaaaatgtcctaGTTTTAGATGCAccatgtttgttattttttttttaaaaaacgtgCTAATTATAGGGGTTAAATTTGTCACTGTCGGCCCAATCTGCCTAAATCAAAGACTAATTCTCTGGCgtgtaattaaaaattaaaaatagctaaTCTTCTAATCACTGGCTTAAATTCTCCTGAACATTCCCCAAGGtttgaatgttttaattaattttctaagtTGATTCCTGATGATAAATATGATGAATTGAACCTAAAAACTATGAAACCCTTTCCAGACTCTTAGAAGCAAATCAAGCTCACTATAACAATCTATCAGCTCTTATAAACAGTACTAAGTGGCTTCTacagtgttgttatttttttgagGGTCCAGCTCAGTGTACTTGCTTCAGTGTTGATCACTTGTTGAGTCGATTGAAGCAGTAGGTTCAAGTGAAAGTGCAACGCTCCAAATTTTGCAGCAATTACTGGAAATAAAAGCATGGCATTAACTCCA
>XM_026942486.2
ccattAGCAGCTCAGAGGAGCTTCTGCACCCAGTGACGTGCCAGTGCAGCCTCCTTTCATTCAACTTTTAATCTGGCGTTGCTTTGCATCACCTAGGCAGAGAGACCTGGAGGACTTCAGTACCGGAGCTGTCCACTCTCCACTCACACTCCACCCTTAGCGTCacgctctctcactcacacacacacacacacacacatacacacacacccttccaCACTTGAAGCAGAGCACTGACATGCCGGGTTGCAGTGCATGAAAAAGGAAGCGACAAAGTGCAAACGGAGTGCAGTTGAGTCTCAACGCAGCCATGGGCGTACTGATGTCCAAGAAGCAGCAGGTGGAGAAGGTTCAGAAATGCAATGCGGTGGTCTCAGCATTTCGCGATGGTCTGAAGAACCAGTCGAGTGTCCCTCAGGCTCAAAACAACTCCGAGAGCAAAGATGAGGCTCCGAACCAGCCAGAGTCTGATGAGTCTGGACGAAAAGAGGAGGACGGGAAACCGGGGCCATCCACTGCTCCACCCAAAGAGGAGAACAAAGCCAATCAGGAGGCCTGGGGCCGCTTACGGGATGGGAAAGGAGTAGAGCCTGAGGAGTTAAATAAAGTGCATCAGCTCACGCCACCAGCGTTTATAAGGCCGAAGAGGCAGCCGAATGACGATCAGCCCATACAGATCGAGCTCGGTCAGAGAGAGCAGccagtGAATGATGAGATGTGCGAGGTGTGCGAAGTGTGGACAGCGGACGATCTGTTCCCATGTCGGATATGTACAAGGGTGTTTCATGACGGTTGCCTGAAGGAAATTGGATACCTGCGTGCTGACACTGTACAGGAGATGAGAGAGACGGCTCACACCACCACGGGCTGGAGCTGCTACTACTGCGACAACGTAAACTTGCTCCTGACTGAAGAAGAGATGTACAGCCTAATGGAGACATTCAAGCAGTGCAAGATCATCCCAGAATCCTGCCTCGTCTCGGACGAGCTCCTTCAGTACAGGCACTTCGTGTCCAAGCAGCTGTTTGAGAAGGATCTGACAGACGATCAGGAGGAGGAGGTGCTGGCCCAGTTTGCTGCTCTTGACCCAGAGAAGAAGGGACAGATAGAGTGGTCAGATTTCCTGTATCATGAGTCGCTGTCAGTGCTGCAGAAATTTCGGACAGAGAACTCCCTGGTGCGTTTGCTCACGGCTAAAGAGCGTGACAGAGCGCGTGCAGTCTTCCAGAGTCTGGACCAGGATAAAGATGGTGTCATCACGGGTGGAGAGAGTCGGCGAGCTCAAACCTCATGGTTCCATAAGCACAGCAAAGAGCCTCAGTCCTGCAACGTCAGCATCAGCCATGTAGGCCCGATTTCAGAGAGCAGTCCTGCCAGCTCAAGCAGTGACAAGAGCAGAGACAAGGCCATGGAGAAATACGacaacagGCCAGTGACATGGGACGCGTTCTTGCGTGAGAGCGCCATCTTCATCCTGGCTGCTCGACCCAACAGCAGCGCCATGCACATCCGTCTGCCCCTGTAATCCCGCCAAACCCAGGCTGGGGTCTGTGGGAAGGCAGCACAGTGTCCCCTAGACGTGTGGAAAAAATCCTGGCACTGAGAAAGGATGCGACACTCAGAGGCTGTATAAGCCATCGACGCACCCCGTCTCAAACAGAACACTATtacttctataacagcacactgaaaaaaagattttaggatttttttctgagatGTATCTCCGGCACATATTGTAAACCAACCAGTCGCAGCTCAGTGGTTGGCTGGGTGAGAAGATTGACAGCTATTTCTGTATGTAAGCTATAAGAAGCACTGCCATCTACTGTgtataaaatagcaaaaatgcACCACAGTATTAAACCATCAGCCTTTAAATATCCAGTCCTTAGTCACTTGTGATCAGAATACATGTGGGATAAAAGTGTTTGACCAGTTTTAAAGCCACTGTAAACAAGAAAACGACAAAACGACCATCAATGTAGTTGGATAGCACAAGCACTAACAGGAATGAAAGCTATctgcatatattatataatatatataagctatataaatgtgaatattaatatgtattatatatatgtgtatttattcctGAAcctcacagttttaaaaatgtcctaGTTTTAGATGCAccatgtttgttattttttttttaaaaaacgtgCTAATTATAGGGGTTAAATTTGTCACTGTCGGCCCAATCTGCCTAAATCAAAGACTAATTCTCTGGCgtgtaattaaaaattaaaaatagctaaTCTTCTAATCACTGGCTTAAATTCTCCTGAACATTCCCCAAGGtttgaatgttttaattaattttctaagtTGATTCCTGATGATAAATATGATGAATTGAACCTAAAAACTATGAAACCCTTTCCAGACTCTTAGAAGCAAATCAAGCTCACTATAACAATCTATCAGCTCTTATAAACAGTACTAAGTGGCTTCTacagtgttgttatttttttgagGGTCCAGCTCAGTGTACTTGCTTCAGTGTTGATCACTTGTTGAGTCGATTGAAGCAGTAGGTTCAAGTGAAAGTGCAACGCTCCAAATTTTGCAGCAATTACTGGAAATAAAAGCATGGCATTAACTCCA

Function

symbol description
phf24 Predicted to enable metal ion binding activity. Orthologous to human PHF24 (PHD finger protein 24).

NR:

description
PHD finger protein 24-like isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942484.2 True 2652 mRNA 0.47 9 21393821 21424847
XM_026942486.2 False 2616 mRNA 0.47 8 21393821 21424847

Neighbor

gene id symbol gene type direction distance location
pigo pigo coding upstream 43998 21337235 ~ 21349823 (+)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390 coding upstream 57883 21327106 ~ 21335938 (+)
fam166b fam166b coding upstream 198785 21188099 ~ 21195036 (+)
rnf208 rnf208,si:dkey-106l3.6,LOC107688056,LOC107744121,LOC107713373,LOC107686464 coding upstream 226279 21151369 ~ 21167542 (+)
slc5a1 slc5a1,LOC107713298,LOC107744177,LOC107688629 coding upstream 246588 21129286 ~ 21147233 (+)
prkab1a prkab1 coding downstream 11055 21435902 ~ 21445264 (+)
LOC113544185 pla2g1b coding downstream 22388 21447235 ~ 21452073 (+)
LOC113523962 pla2g1b coding downstream 37696 21462543 ~ 21466143 (+)
LOC113543961 NA coding downstream 43565 21468412 ~ 21473118 (+)
ppp2r2ab ppp2r2a,ppp2r2ab,LOC108277296,LOC108427249,LOC107744137,LOC107720666,LOC107678035,LOC107687801 coding downstream 847219 22272066 ~ 22289033 (+)
G272803 NA non-coding upstream 403270 20990343 ~ 20990551 (+)
G272770 NA non-coding upstream 462238 20927622 ~ 20931583 (+)
G272470 NA non-coding upstream 644174 20749361 ~ 20749647 (+)
G272450 NA non-coding upstream 656321 20716511 ~ 20737500 (+)
G272448 NA non-coding upstream 668627 20659603 ~ 20725194 (+)
G272940 NA non-coding downstream 55053 21479900 ~ 21492672 (+)
LOC113544190 NA non-coding downstream 63265 21488112 ~ 21492076 (+)
G273248 NA non-coding downstream 537817 21962664 ~ 21962867 (+)
G273258 NA non-coding downstream 557132 21981979 ~ 21982191 (+)
G273226 NA non-coding downstream 612992 22037839 ~ 22038149 (+)
LOC113544125 LOC100304632 other upstream 32077 21359519 ~ 21361744 (+)
G272408 NA other upstream 850867 20540325 ~ 20542954 (+)
G272374 NA other upstream 964678 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 994874 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 1450316 19853554 ~ 19943505 (+)
LOC113543995 NA other downstream 51240 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 497704 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 944409 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 1197581 22622428 ~ 22665570 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other downstream 1624965 23049812 ~ 23145567 (+)

Expression


Co-expression Network