LOC113543956 (gpr21,LOC108433543,LOC107686419,LOC101884949,LOC107744074,LOC107597614,LOC107595548)


Basic Information

Item Value
gene id LOC113543956
gene name gpr21,LOC108433543,LOC107686419,LOC101884949,LOC107744074,LOC107597614,LOC107595548
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23342796 ~ 23345808 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942502.2
gagagagagaataagaggaagggagggaggaagggaagCGAGGCAGGCTGTGCTCTCTGCACCGCACCACTCTCTCCCTCATTACCATTCCAGACACTGCCTTCTCTGAGGAGAGCCCTTCGCTCTGTTTGAAATGCCAATCACCGCTGGCTGTCCTTTCATCCTCGATCACACGCACTGAAAGCACGGGTGAGCGGGAGCCCCGCAGACGCCGAGAGGATTTCCCGCTCTTCTCCATCCAACCAAAGTTactctgaaaaagaaaaatacacacgGATAACGCTGTTAAGGATTGCAGGATCTTGACTAGACTGTTTTCCGTTTGTGATCTCATCAGCGGACTAATCAGTGCTAAGAGGACAGATGGGGATCCTTTAATCAGAGTGGTAAGGACTTTActtcctctttcctttttatCATCCACTTTGACTCTGGCATCGGTCTGAGCTCCGTCACAGCTGTGCCTCTCCTGGAAAAGGCAAGAACTGGACCGAGGAAGTCAAGGTTGAAGGTGGGGGACGTTAGTGCTGGTACGTCCTGTGTGGTTACGAATTGGATTATATGGTTAATAACTGCCCTTCTTGCACTGTGTGAGATCCATCCTACCCCAGATATTAGACCTTCTGTAAACCTGTGTATAAAAGGATTCCCGTAGACTGCGGAAACGAGCGACTCGTGTTCCTGCTGAGATGGCAGACATCAGGCACGGGCATGTCTATCCCATCTGCCGGGGCCAGCAGCAGTCTGGGCAATATCTGCTGAGTTAGGCCCCCCCGAGGAAACCTTCCTCCATCCTCGTATGCCCACACACTTCTTTAACAAGATGAACACAACTGAGCTGAACCAGAGCGCTGTGACCTTTTGCCTGCTGGACATTGGTTATTCTCAGATCTTCAACACGTGCCTGCTGGAAGTCGTTGTGATCCTCTTTCTTACCGTGCTCATTATCTCCGGGAACTTAATTGTCATCTTTGTGTTTCACTGCGCACCTCTACTCAGCCACCATACCACCAGCTCTTTCATCCAGACAATGGCTTACGCTGACCTGCTGGTGGGAGTGAGCTGCCTCATCCCGTCCCTGTCTTTGCTACACCACCTGAAAGGGCTGGATGAGGAACTCACCTGCAAAGTGTTTGGTtacatggtgtgtgtgctgaagaGCGTCTCCATGGCCTCGCTGGCATGTGTTAGCGTGGACCGCTATGTGGCCATTACGCGGCCGCTGTCCTACGCAGCCTTGGTGACACCGTGCCGTCTTCGTGCCTGCATTGCCCTCATCTGGCTCTACTCCTGTCTAATCTTCCTGCCATCCTTCTTTGGCTGGGGCAAGCCCGGGTATCACGGTGATGTCGTCGAGTGGTGCTCTTCGTCCTGGGCCACCCAGCCACTCTTCACTGCCTTCATTGTGGCGGCGCTGTACGCACCTGCAGCCCTCACTGTGTGCTTCACATACGGCCACATTTTCCGGATATGCCGCCAGCACACCCGACAGATCAGCGAGCGCCGGGCACGATTTGGCCCGCAGGAAAATGAGCCGGGCGAACCACCCGGCCCTGACAAGCGCTACGCCACGGTGCTCTTCCGCATCACCAGCGTGTTCTACTTGCTGTGGCTACCATACATCATCTACTTCCTGCTAGAGAGCGCTGGAATATATCGCCATCCTGCAGCCTCCTTTTTAACCACATGGCTTGCGATCAGCAACAGCTTCTGCAACTGCCTCATCTACAGCTTGTCGAACAGTGCCTTCCGGAAAGGCCTCAAGCGCCTCTGTTTGATCTGCATAAAACGCACAGACAACAAGAAACCCCCAGGAGTGCCACCAGCTCCTCCTCGCCCGGCCTGTCATGTGTAGCGCCCAGTACGGACTGGACTGTGTCGCGTATTGTGTGTCGCCAGTTTGTCTCAGTCAGTGGAAACAGGCTTGTGTTGGCATCTGGGTGGCATTCCCAGGTTTTGTCCCAGAGTCTGGTTGTCTTCGTGACAATTCCTCGAGGCAAAGGAGTCACCTTTCACCCCGACCATCAATGTCGAAGGGGTAGTTAAGGCTGCTGTTTTGTGCAGCATTGAATAACAACTCTTTATGCAAAACATGACAAACAAGAAGGTGAAGAAAAAATGTCATGACACTGAAAGTGTAATAATCATGGGTCTAtattaatgggaaaaaaaataccctAGTTTTGTAAACTAAATGCTTACGTACATCATCTGTCAAGTCATATGACCTCTTAAATGAGCAACAACctattaacatattaacattCATCAACCTTAACCAGAGAGTGCtgatgtttcttttgtttttgggacatttttataaagtgttatcaGAGAAACCTGTGACTAATCATGTGCCACATTTCTTCCTGTTAGCTGCTTCTTTAGCGACACACGTTTTGCGGATTGTATAACTTTGTCTCTGGTCACAGGACGAACGTATGAGTggatcaaacaaacaaaccattcTGCTTGACTTCAGATTGCACAAAGATGCACTTTCTGACTGGAAGACATGGGACCTCACCGCATTATTCCCTCTctagttttgtgttgtttaaaaaatgttttaattatcaCCCATGGGTGAAGTCAATCTCAGAAGATGACCAGCTGAAGAGCCTCCTTTCTGTTGACTTTTCAGAATCACATCCCTGGATTCGCATTGAGTCATTTGATGTGATGTTTCTTCATACCATGCAGCATAAGTGTAGCACAGCTGTCTCGGCATGTTCGGTTTACTTTCCAAAATGGAGTTCTCTATCTGTAGTGCTGTACGCCTTATGGTAATATTTATCGAAAAACATTGCATCGATTATGGATCACACTTAACACGAGCCAGAGAGCTGTGTCTCTCAGCTATAAGGCAAAGACTCTAGCCTCTGTAACAACAGAACGTgagatatttattttgcaaaaacacaCCTGGTCTCCTGGTTGAAGGACACGTAaatacaaacaagcaaaaaaaaaaaaaaaattaagggtATGAttcgtgcaaaaaaaaacaaag

Function

symbol description
gpr21 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within glucose homeostasis; negative regulation of insulin receptor signaling pathway; and regulation of growth. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

GO: NA

KEGG:

id description
K04318 GPR21; G protein-coupled receptor 21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942502.2 True 3013 mRNA 0.49 1 23342796 23345808

Neighbor

gene id symbol gene type direction distance location
si:ch211-243g18.2 LOC108277365,LOC108433518,LOC107744167,LOC107685187,LOC107686498,LOC107713290 coding upstream 110761 23220145 ~ 23232035 (+)
ndufa8 ndufa8,LOC107686420 coding upstream 173279 23163709 ~ 23169517 (+)
rbm18 rbm18,LOC107686423 coding upstream 221089 23104677 ~ 23121707 (+)
paqr3b paqr3b,LOC108276876,LOC108433513,LOC107713330,LOC107597624,LOC107744080 coding upstream 297718 23040466 ~ 23045078 (+)
antxr2b LOC108276875,LOC108433535,LOC107685134,LOC107597625,LOC107744079,LOC107686426 coding upstream 303247 23019928 ~ 23039549 (+)
sh2d3ca sh2d3ca,LOC108277244,LOC108433546,LOC107713320,LOC107597612,LOC107744235 coding downstream 220906 23566714 ~ 23618521 (+)
urm1 urm1 coding downstream 278329 23624137 ~ 23640347 (+)
cercam cercam,LOC107744239,LOC107597609,LOC107685123 coding downstream 316811 23662619 ~ 23676630 (+)
sardh sardh coding downstream 337742 23683550 ~ 23721518 (+)
fam163ba fam163b,LOC107595554,LOC107713289,LOC107685121,LOC107597608 coding downstream 409309 23755117 ~ 23777033 (+)
G273880 NA non-coding upstream 9247 23286000 ~ 23333549 (+)
G273865 NA non-coding upstream 63007 23261046 ~ 23279789 (+)
G273719 NA non-coding upstream 206964 23135579 ~ 23135832 (+)
LOC117599346 NA non-coding upstream 268858 23068937 ~ 23073938 (+)
G273644 NA non-coding upstream 280451 23047921 ~ 23062345 (+)
G273900 NA non-coding downstream 51000 23396808 ~ 23398531 (+)
G274161 NA non-coding downstream 329835 23675643 ~ 23677227 (+)
G274186 NA non-coding downstream 506189 23851997 ~ 23852218 (+)
G274192 NA non-coding downstream 514016 23859824 ~ 23860703 (+)
G274193 NA non-coding downstream 523046 23868854 ~ 23869197 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other upstream 68143 23244560 ~ 23274653 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other upstream 197229 23049812 ~ 23145567 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 677226 22622428 ~ 22665570 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 967921 22369256 ~ 22374875 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other upstream 1308799 21922551 ~ 22033997 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 592170 23937978 ~ 23940132 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 757265 24103073 ~ 24112853 (+)
LOC117599389 NA other downstream 880346 24226154 ~ 24232819 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other downstream 1134791 24480599 ~ 24498642 (+)
erbin erbin,erbb2ip other downstream 1184170 24529978 ~ 24639642 (+)

Expression


Co-expression Network